Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L17.2
         (1359 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000584E52 Cluster: PREDICTED: similar to RNA-bindin...    36   1.8  
UniRef50_A0DA74 Cluster: Chromosome undetermined scaffold_43, wh...    34   7.4  
UniRef50_Q6ZD62 Cluster: Putative pherophorin-dz1 protein; n=4; ...    34   9.8  

>UniRef50_UPI0000584E52 Cluster: PREDICTED: similar to RNA-binding
           protein involved in epigenetic programming of
           developmental genome rearrangements; n=1;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           RNA-binding protein involved in epigenetic programming
           of developmental genome rearrangements -
           Strongylocentrotus purpuratus
          Length = 1584

 Score = 36.3 bits (80), Expect = 1.8
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = +3

Query: 840 GWVXXPX----GGWGXKPPVXPXGGPXXGXXXFGXPPGXXK 950
           GW   P     GGWG +PP  P  GP  G    G P G  K
Sbjct: 296 GWGKPPATEAPGGWGNRPPTTPTSGPPPGPPPPGPPAGWNK 336


>UniRef50_A0DA74 Cluster: Chromosome undetermined scaffold_43, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_43, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1401

 Score = 34.3 bits (75), Expect = 7.4
 Identities = 25/89 (28%), Positives = 26/89 (29%), Gaps = 1/89 (1%)
 Frame = -2

Query: 1052 PXXXPPXXKXXXPPQKXPXXXXPXTXGXXPXGXNFXXPGXXSKXXXXXXXPPXXXNRGFX 873
            P   PP  K   PP   P    P   G  P       PG  +        PP     G  
Sbjct: 829  PPPPPPGGKSAPPPPPPPPP--PGGKGAPPPPPPPPPPGSKTGPPPPPPPPPPGAKTGSA 886

Query: 872  PPPPXWXXHP-PPXXKTXXXGXXKXXPXP 789
            PPPP     P PP       G     P P
Sbjct: 887  PPPPPPPGGPRPPGPPPPPGGAPPLPPGP 915


>UniRef50_Q6ZD62 Cluster: Putative pherophorin-dz1 protein; n=4;
            Eukaryota|Rep: Putative pherophorin-dz1 protein - Oryza
            sativa subsp. japonica (Rice)
          Length = 342

 Score = 33.9 bits (74), Expect = 9.8
 Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
 Frame = -2

Query: 1052 PXXXPPXXKXXXPPQKXPXXXXPXTXGXXPXGXNFXXPGXXSKXXXXXXXPP-XXXNRGF 876
            P   PP  +   PPQ+ P    P      P G     PG           PP        
Sbjct: 34   PPVMPPRPQAPPPPQRFPPPPAPPIRPPSPPGRAPPPPGRAPPPPSQAPPPPRRAPPPPA 93

Query: 875  XPPPPXWXXHPPP 837
             PPPP     PPP
Sbjct: 94   LPPPPPRRAPPPP 106


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,277,904
Number of Sequences: 1657284
Number of extensions: 7207047
Number of successful extensions: 16848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14940
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 141322928891
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)