Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L17.2
         (1359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           31   2.1  
11_06_0610 - 25449085-25453284                                         31   2.8  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 19/59 (32%), Positives = 19/59 (32%)
 Frame = -3

Query: 526 GKPXXPPXXXXNPFPXPXXXGXXXXXXGNGXGPQKPTPXPXGXXXXXXPXKXXXPPPXP 350
           G P  PP     P P P          G G GP  P P P        P     PPP P
Sbjct: 319 GAPPPPPAHPAAPAPPPPAPSPSAA--GAGSGP-PPPPPPAAPAAPRPPGPGPGPPPPP 374


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 20/88 (22%), Positives = 25/88 (28%)
 Frame = -2

Query: 1040 PPXXKXXXPPQKXPXXXXPXTXGXXPXGXNFXXPGXXSKXXXXXXXPPXXXNRGFXPPPP 861
            P   K   P +K P           P       P            PP   ++   PPPP
Sbjct: 605  PSPPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPP 664

Query: 860  XWXXHPPPXXKTXXXGXXKXXPXPXXKS 777
                H P   K+      K  P P  +S
Sbjct: 665  TPEGHTPSPPKSTPP-TEKSPPTPESES 691



 Score = 29.1 bits (62), Expect = 8.5
 Identities = 16/72 (22%), Positives = 20/72 (27%)
 Frame = -2

Query: 1040 PPXXKXXXPPQKXPXXXXPXTXGXXPXGXNFXXPGXXSKXXXXXXXPPXXXNRGFXPPPP 861
            P   K   P +K P      +    P       P            PP   +    PPPP
Sbjct: 671  PSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPPPP 730

Query: 860  XWXXHPPPXXKT 825
                H P   K+
Sbjct: 731  APEGHTPSPPKS 742


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,557
Number of Sequences: 37544
Number of extensions: 283097
Number of successful extensions: 990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4283391936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)