Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L17.2
         (1359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    30   3.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.7  

>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -2

Query: 902 PPXXXNRGFXP--PPPXWXXHPPP 837
           PP   NRG  P  PPP W   PPP
Sbjct: 42  PPWHRNRGPPPFGPPPPWDRPPPP 65


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 940 PGGXPXXXXPXXGPPSGXTGGXXPHPPFG 854
           PGG P    P   PP G  GG  P PP G
Sbjct: 765 PGGCPPPPPPP--PPGGFKGGPPPPPPPG 791


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 940 PGGXPXXXXPXXGPPSGXTGGXXPHPPFG 854
           PGG P    P   PP G  GG  P PP G
Sbjct: 765 PGGCPPPPPPP--PPGGFKGGPPPPPPPG 791


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 940 PGGXPXXXXPXXGPPSGXTGGXXPHPPFG 854
           PGG P    P   PP G  GG  P PP G
Sbjct: 348 PGGCPPPPPPP--PPGGFKGGPPPPPPPG 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,436,506
Number of Sequences: 27780
Number of extensions: 198217
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3829657504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)