Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L14.2
         (1233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    49   2e-06
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    40   0.001
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    38   0.004
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    30   0.76 
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    29   1.0  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        29   1.0  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   4.0  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    27   5.3  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   9.3  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 265 TRKEIKXYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKIS 444
           T ++I  +   F+ FD  +DG +   E+  +M  LG   T   L+ MI+EVD DG+  I 
Sbjct: 7   TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66

Query: 445 FREFL-LIYRKAR 480
           F EFL ++ RK +
Sbjct: 67  FTEFLTMMARKMK 79



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 298 FNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKISFREF 456
           F  FD+  +G++ + E+  ++  LG   +   +  MI E D DGD  I++ EF
Sbjct: 91  FKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = +1

Query: 232 FVNVYTEFHEFTRKEIKXYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMIS 411
           FV V TE     R  ++  +  F  FD+   G + L  ++R+ + L        L+AMI 
Sbjct: 95  FVRVMTE-KIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIE 153

Query: 412 EVDEDGDNKISFREFLLI 465
           E D D D +I+ +EF+ I
Sbjct: 154 EFDLDQDGEINEQEFIAI 171


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +1

Query: 229 KFVNVYTEFHEFTRKEIKXYEVTFNKFDEGRDGFL---DLTEVKRMM--ERLGAPQTHLG 393
           +F+N  + F     KE K  +  F  +D  RDG++   +L  V +MM    L   Q    
Sbjct: 77  EFINSLSVFSVHGNKEEKL-KFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQI 135

Query: 394 LKAMISEVDEDGDNKISFREF 456
           +   I EVD+D D KISF EF
Sbjct: 136 VDKTIMEVDKDRDGKISFEEF 156



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 262 FTRKEIKXYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKI 441
           F+ +EI+     F K D  + G +D  E   +      P        + S VDEDG   +
Sbjct: 18  FSNEEIERIRKRFIKIDANQSGSIDRNEFLSIPSVASNPLA----SRLFSVVDEDGGGDV 73

Query: 442 SFREFL 459
            F+EF+
Sbjct: 74  DFQEFI 79


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 298 FNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNKISFREF 456
           + K ++ +   LDL +V RM + L    +   L+    + D D   K+SF EF
Sbjct: 303 WEKLEKEQSAQLDLGDVHRMCQMLHLNASMEFLEETFQKADADHSGKLSFEEF 355


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +1

Query: 250 EFHEFTRKEIKXYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDG 429
           ++ E T +EI      FNK D    G+LD     +  E      ++  ++  I EV+ D 
Sbjct: 9   KYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVNVDS 67

Query: 430 DNKISFREFLLIYRKARAG 486
             ++   +F+ I+   + G
Sbjct: 68  SGRVEPEDFVGIFNVLKKG 86


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 727 NRKRYCYLSSL*DVMLPMLGMSCSNSVLFFKQNKINFSV 843
           N+  YC L ++ D ++  + + C   +L+F   K+N  +
Sbjct: 67  NKNTYCELPAVADAIINSIALVCIIVILYFSSRKLNVEI 105


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 854 RSKLTEKLILFCLKNNTLLLQLIPSIGNITSYRLDK 747
           RSK+      FCL N  + L LI +IGN     L K
Sbjct: 339 RSKVGPGSCFFCLSNPNVALHLIVAIGNEAYMALPK 374


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/60 (25%), Positives = 26/60 (43%)
 Frame = +1

Query: 259 EFTRKEIKXYEVTFNKFDEGRDGFLDLTEVKRMMERLGAPQTHLGLKAMISEVDEDGDNK 438
           EFTRK     E + +  D G     ++ +VK +   L  P+       ++S + E+   K
Sbjct: 266 EFTRKSSSSVEFSDHSQDSGDPSQQNILQVKNVQAVLSIPEAESYKAQLLSSIAEEQKKK 325


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 680 GGSNLKKK-LRYSNTNRIENDIVICLVC 760
           G  +LK++ L+YSN  +  ND  +C+ C
Sbjct: 149 GSESLKERSLKYSNRLQASNDTGVCVKC 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,653,719
Number of Sequences: 5004
Number of extensions: 67934
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)