Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_L10.2
(1269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 52 2e-07
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 44 3e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 36 0.012
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 33 0.084
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 29 1.0
SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.4
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 27 5.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 7.3
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 26 9.6
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 51.6 bits (118), Expect = 2e-07
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Frame = +1
Query: 373 LHVLERAWHAACVRCADCRAPLSDKCYSRD----NKL--FCRNDFFRRYGTKCSGCGHGI 534
+ L +H C RC DC + ++ K + D NK C D+FRR C+ CG +
Sbjct: 128 VRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRRLDLLCASCGMAL 187
Query: 535 SPSDLVRKAREKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKEDY 678
+ A K FH+ FTC +C + Y + K C Y
Sbjct: 188 RGYYIT--ALNKKFHIEHFTCSLCYTVFGPNDSYYEY-EGKVYCHYHY 232
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +1
Query: 397 HAACVRCADCRAPLSDKCYSRDNKLFCRNDFFRRYGTKCSGCGHGISPS--DLVRKAREK 570
H C C P +D Y + K++C + + +C GC I ++ R +
Sbjct: 203 HFTCSLCYTVFGP-NDSYYEYEGKVYCHYHYSTLFAARCCGCDGPILRQFVEVYRNGVSQ 261
Query: 571 VFHLNC 588
+H+ C
Sbjct: 262 NWHVPC 267
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 44.4 bits (100), Expect = 3e-05
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = +1
Query: 352 PILDKFLLHVLERAWHAACVRCADCRAPLSDK--CYSRDNKLFCRNDFFRRYGTKCSGCG 525
PI D+ +H+ +H CA C + C RD+ +C+ + +Y KC C
Sbjct: 324 PIEDQ-AVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVKCKKCR 382
Query: 526 HGISPSDLVRKAREKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICK 669
I + K + +H C+TC C L G+E Y + +N IC+
Sbjct: 383 KPILGISV--KGSDGEYHSQCWTCGACNALL--GDEGYFMIENTPICR 426
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 35.9 bits (79), Expect = 0.012
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 391 AWHAACVRCADCRAPLSDKCYSRDNK-LFCRN 483
++H C RC DCR + D + RDN+ +FC +
Sbjct: 96 SYHRECFRCHDCRKQIIDSNFKRDNRTIFCND 127
Score = 31.1 bits (67), Expect = 0.34
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Frame = +1
Query: 394 WHAACVRCADCRAPLSDKCYSRDNKLFCRNDFFRRYGTKCSGCGHGISP-----SDLVRK 558
WH C C C DK +++ + R CS C H + D
Sbjct: 40 WHKDCFCCTKC-----DKGLEHSDQMLVQTSDGRPV---CSSCAHTCTACRMRIKDYALM 91
Query: 559 AREKVFHLNCFTCLVCRKQL 618
+ +H CF C CRKQ+
Sbjct: 92 SGYDSYHRECFRCHDCRKQI 111
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 505 TKCSGCGHGISPSDLVRKAREKVFHLNCFTCLVCRKQLSTGEELYV-LDDNKFIC 666
T C CG + ++H +CF C C K L +++ V D + +C
Sbjct: 17 TVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVC 71
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 33.1 bits (72), Expect = 0.084
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 568 KVFHLNCFTCLVCRKQLSTGEELYVLDDNKFI-CK 669
K +H +CF C+ C K+L E + DD K I CK
Sbjct: 42 KCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCK 76
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 805 LHSELSHNGDTKPHEDSEDQGSLDGDPEXRXS-QAXNXSPDD 927
+H ELSHN + +D D+ L + R S ++ N S D
Sbjct: 703 VHRELSHNSSSNDEDDGNDEDPLSREMSRRLSFESANDSDQD 744
>SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 580 LNCFTCLVCRKQLSTGEELYVLDDNKFICKEDYLAG 687
+ CF L + + GEE Y+L+ +KF +E Y G
Sbjct: 38 VQCFGHL-SKNGVVLGEEAYILEQSKFAAEEQYYLG 72
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 373 LHVLERAWHAACVRCADCRAPLSDKCYSRDNKLFCRND 486
+H LE+ +C D AP++ YS D K D
Sbjct: 461 IHTLEKGELCEVAQCKDSTAPITCLAYSPDGKYLACGD 498
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 867 ALVFGVFMWFCISVVR 820
AL+FG+F+W I V+R
Sbjct: 416 ALLFGLFLWLTIKVIR 431
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 368 NLSRIGFSQP-AHAIAPPASPRPPNDG 291
N+ I S +HA APP+ P PPN G
Sbjct: 64 NVGHISLSSANSHAYAPPSGP-PPNTG 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,376
Number of Sequences: 5004
Number of extensions: 56025
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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