Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L10.2
         (1269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.16 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   0.26 

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect(2) = 0.16
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 586 CFTCLVCRKQLST 624
           C+TC VC K LST
Sbjct: 371 CYTCDVCGKTLST 383



 Score = 22.2 bits (45), Expect(2) = 0.16
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 508 KCSGCGHGISPSDL 549
           K  G GHG+ P DL
Sbjct: 325 KFPGMGHGLQPPDL 338


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = +2

Query: 362 INSSCTCWRGPGTPLASDAPTAEPRSQINAILGTINYSAGMIFLGVTERNAAAAVTESHR 541
           +N S   W   G  L S      PRS    +LG +     MI +     N AA +     
Sbjct: 608 LNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERP 667

Query: 542 RTWLGRLGRRSSTSTASPVSCA 607
           +T L  +      +T   ++CA
Sbjct: 668 KTKLTGINDARLRNTMENLTCA 689


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,734
Number of Sequences: 438
Number of extensions: 4437
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43462806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)