Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_L08.2
(1284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 32 0.85
06_03_0790 - 24636805-24637770 31 2.6
02_05_0686 - 30900748-30902167,30903442-30904742 31 2.6
02_04_0400 - 22608519-22608844,22609044-22609122 31 2.6
01_06_1794 - 39919363-39920025 31 2.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.4
08_01_0202 - 1638978-1639571 30 3.4
07_03_1136 + 24218601-24218734,24218769-24219906 30 3.4
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 30 4.5
12_01_0473 + 3708770-3710026 29 6.0
07_03_0177 - 14770777-14772045 29 6.0
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378... 29 6.0
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 29 6.0
12_02_1219 + 27096477-27096590,27096704-27097078 29 7.9
10_08_0216 - 15942379-15942852,15942956-15943033 29 7.9
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 29 7.9
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 32.3 bits (70), Expect = 0.85
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGGXXLPQKXXXGG 540
GGGGGG GGG G GG +P GG
Sbjct: 15 GGGGGGTAGACCPGAAGGGGGGVGGVFIPGIIGGGG 50
>06_03_0790 - 24636805-24637770
Length = 321
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGG 507
GGGGGG R GGG G GG
Sbjct: 114 GGGGGGGRGGGGGGGGGGGGGGGGG 138
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = -3
Query: 541 SPXPXFFGGXPXPXXXPSPPXPXWXXGXXXXXXXXXXXSQXXPPPPPP 398
+P P G P P PP P G + PPPPPP
Sbjct: 335 APPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGG 507
GGGGGG R GGG G GG
Sbjct: 57 GGGGGGGRGGGGGGGGGGGGGGGGG 81
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGGXXLP 519
GGGGGG GGG G GG P
Sbjct: 67 GGGGGGGGGGGGGGGGGGGGGGGGGGYYP 95
>01_06_1794 - 39919363-39920025
Length = 220
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGGXXLPQ 522
GGGGGG S GGG G G PQ
Sbjct: 124 GGGGGGGYTGGGSVPYGGGGGVPAGYWTPQ 153
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = -3
Query: 532 PXF-FGGXPXPXXXPSPPXPXWXXGXXXXXXXXXXXSQXXPPPPPP 398
P F FG P P PP + SQ PPPPPP
Sbjct: 68 PQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPP 113
>08_01_0202 - 1638978-1639571
Length = 197
Score = 30.3 bits (65), Expect = 3.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGG 507
GGGGGG R GGG G GG
Sbjct: 92 GGGGGGGRYGGDRGYGGGGGGYGGG 116
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGG-XXLPQKXXXGG 540
GGGGGG GGG G GG P++ GG
Sbjct: 189 GGGGGGPGRAPGGGGGGGGLGGGGGEGGAPERVIGGG 225
Score = 29.5 bits (63), Expect = 6.0
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 421 FAXXGGGGGGXRXXXXSXXXGGGXGXXGGXXLPQKXXXGG 540
F+ GGGGGG GGG G GG P GG
Sbjct: 316 FSGGGGGGGGGEIAGTVDLRGGG-GGAGGVFPPTPDLGGG 354
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.9 bits (64), Expect = 4.5
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -3
Query: 511 PXPXXXPSPPXPXWXXGXXXXXXXXXXXSQXXPPPPPP 398
P P P PP P G PPPPPP
Sbjct: 274 PPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPP 311
>12_01_0473 + 3708770-3710026
Length = 418
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGG 507
GGGGGG S GGG G GG
Sbjct: 4 GGGGGGGGAAPSSSNIGGGSGGGGG 28
>07_03_0177 - 14770777-14772045
Length = 422
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 421 FAXXGGGGGGXRXXXXSXXXGGGXGXXGG 507
F GGGGGG GGG G GG
Sbjct: 67 FGGGGGGGGGGGFGGGGGFGGGGGGGLGG 95
>03_01_0502 -
3779551-3779562,3779863-3780012,3780129-3780172,
3780256-3780319,3780422-3780655,3780765-3780908,
3781027-3781221,3781447-3781522,3781689-3781788,
3781955-3781988,3782076-3782160,3782226-3782290,
3782380-3782478,3782810-3782875,3785485-3785721
Length = 534
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGG 507
GGGGGG S GGG G GG
Sbjct: 9 GGGGGGGGGLELSVGVGGGGGARGG 33
>02_03_0390 +
18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGG 507
GGGGG R S GGG G GG
Sbjct: 3 GGGGGDGRRRRPSAGGGGGGGGRGG 27
>12_02_1219 + 27096477-27096590,27096704-27097078
Length = 162
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 433 GGGGGGXRXXXXSXXXGGGXGXXGGXXLPQKXXXG 537
GGGG G R GGG G GG Q+ G
Sbjct: 93 GGGGYGQRGGGGGYGGGGGYGGGGGGGYGQRREGG 127
>10_08_0216 - 15942379-15942852,15942956-15943033
Length = 183
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +1
Query: 424 AXXGGGGGGXRXXXXSXXXGGGXGXXGGXXLPQKXXXGG 540
A GGGGGG GGG G GG GG
Sbjct: 75 AASGGGGGGGGGGGYGYGAGGGYGQAGGPYYGPYASGGG 113
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 29.1 bits (62), Expect = 7.9
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -3
Query: 511 PXPXXXPSPPXPXWXXGXXXXXXXXXXXSQXXPPPPPP 398
P P P PP P Q PPPPPP
Sbjct: 53 PHPPPPPPPPQPAKEPPPPTKPKHPKPKQQQHPPPPPP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,877,966
Number of Sequences: 37544
Number of extensions: 196700
Number of successful extensions: 5377
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4475
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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