Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_L07.2
(1274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 30 0.79
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 28 2.4
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 4.2
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 27 4.2
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 27 5.5
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy... 27 7.3
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 26 9.7
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 9.7
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 29.9 bits (64), Expect = 0.79
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 584 VQCSISTGELSFDDTIDQIDEEKIDQCIEEAFEELSGSFTSVCQNENSQES 736
+QC T +L FD I+ + + + ++E + SF S+ QN ES
Sbjct: 93 LQCQALTTKLGFDQRIEGMIRDLWALYLSLSYESFTSSFLSLNQNSTQSES 143
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +2
Query: 461 NGQIISAVSIEEICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQI 640
+ QII A+ + + E+D I +S + S TS +R V+ C+ S G SF ++
Sbjct: 527 SSQIIEALRLHKPLEELDIILQSEEIQNSETSAVRL----VMSCAYSLGSRSFSHALNVF 582
Query: 641 DE 646
++
Sbjct: 583 EK 584
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 4.2
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +2
Query: 374 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 553
L+D ++ DY + N NN N QQ V+ + V + + + S+ +S+
Sbjct: 207 LADSNMEDYTRAVMNYINNSENTQQ-ASVSPEESQLVMLSRFVFSVASGWVSVLMNSSSA 265
Query: 554 STLRNRK-PDVVQCSISTGELSFDDTIDQIDEEKIDQCI 667
N + P + ++ +G ++FD+ + + + Q +
Sbjct: 266 HQSNNLEFPSSISGNVESGNVAFDEFLSLLHAGNLVQAM 304
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.5 bits (58), Expect = 4.2
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +2
Query: 356 RKVAXQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSID 535
RKV L +K +ID N + + EA++Q + A+S +I + I++ +
Sbjct: 110 RKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHK 169
Query: 536 RLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDE-EKIDQCI 667
R+ + + + +T ++ D DE EK ++C+
Sbjct: 170 RMRENIWAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 937 KYILQKFIYLIKISKYPLKLRKFVKSAIIPKICQLLESAA 818
KYIL+K+ L+ K PLK K + +P L SAA
Sbjct: 128 KYILEKYPELVSGGKKPLKGLKLIFDGNVPTGGGLSSSAA 167
>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 795 PHCTVGLFNREVNLLTRVVTDSWLFSFWHTLVKLP 691
P T GLFN+ + ++ + +W + L LP
Sbjct: 167 PRFTSGLFNKAIQVMYNTLVSNWNTEYARLLCNLP 201
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 620 DDTIDQIDEEKIDQCIEEAFEELSGSFTSVCQNENSQESVTT 745
D+TI ++DE+KI I A + + ++CQN+ S++ + T
Sbjct: 188 DNTITELDEDKI--YIIGAIVD-KNRYKNLCQNKASEQGIKT 226
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 9.7
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Frame = +2
Query: 305 DLKXTTFDSAQLLKKVRRKV--AXQLSDKSIIDYNDFIRNLQNN-----EANDQQFFFVN 463
D T D+ L+ K+ + A Q+S++ I D +++ + Q ++ + Q +
Sbjct: 451 DWDRTLVDNGALISKLYTETVEAEQMSNR-IDDGLEYVSSSQQELFKLLDSYETQLETFD 509
Query: 464 GQIISAVSIEE--ICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGEL 613
G+ SA+++E DDI +DRL T+ N+ D + S E+
Sbjct: 510 GRATSALNVERERAFGVADDILSRLDRLGEDLGTVINQMNDFSKPDDSISEI 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,737
Number of Sequences: 5004
Number of extensions: 57080
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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