Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L07.2
         (1274 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   2.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   7.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   9.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   9.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   9.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   9.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 374 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 553
           L+DK + +  D I    ++       FF+          E++ +E+D+IF   DR A+  
Sbjct: 333 LTDKEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQ 392

Query: 554 STL 562
            TL
Sbjct: 393 DTL 395


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -2

Query: 967 ILLNNL*DKQKYILQKFIYLIKISKYPLKLRKFVKSAIIPKICQLLESA 821
           I+L ++     + L +FIY  +++ +   L  F+K+A + ++  L + A
Sbjct: 71  IVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQA 119


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 740 TTLVKRFTSLLNSPTVQCGPRRQRQCCSRFQELAD 844
           T  V  F SLL   TV    +R +   +RFQ++A+
Sbjct: 289 TCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAE 323


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 740 TTLVKRFTSLLNSPTVQCGPRRQRQCCSRFQELAD 844
           T  V  F SLL   TV    +R +   +RFQ++A+
Sbjct: 289 TCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAE 323


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 599 STGELSFDDTIDQIDEEKIDQCIEEAFEELS 691
           STG+++FDD  D+I  E     I+E  +++S
Sbjct: 343 STGKVAFDDNGDRIFAEYDIINIQENGDQVS 373


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 740 TTLVKRFTSLLNSPTVQCGPRRQRQCCSRFQELAD 844
           T  V  F SLL   TV    +R +   +RFQ++A+
Sbjct: 228 TCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAE 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,356
Number of Sequences: 438
Number of extensions: 3756
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43702932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)