Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L05.2
         (1292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   7.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.8  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 5/59 (8%)
 Frame = +1

Query: 58  FFFFXFFFXFF-----XXXXXXXXXXXXXXFXXFXXXFFFFFFFXFFXXXFXXXXXXFF 219
           FF++ FFF FF                      F   FF+F  F FF   F      FF
Sbjct: 74  FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFF 132


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -3

Query: 513 PPXXPXXGXFFXXKXXPPPPPP 448
           PP  P    F      PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -3

Query: 513 PPXXPXXGXFFXXKXXPPPPPPX*KKXXTHXFXP 412
           PP  P  G        PPPPPP      +  + P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,390
Number of Sequences: 5004
Number of extensions: 17852
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)