Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_L05.2
(1292 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 32 0.86
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 31 1.5
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266 30 3.5
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 30 3.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 3.8
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 30 4.6
07_01_0176 - 1244704-1245102 29 6.0
09_06_0289 - 22053561-22055666,22055745-22055771 29 8.0
02_01_0475 + 3422629-3422695,3422960-3423216 29 8.0
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 32.3 bits (70), Expect = 0.86
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = -3
Query: 183 KKXKKKKKKKXXXKXXKXXXXXXXXXXXXKXKKXKKKXKKK 61
KK KKKKKKK K K K KK KKK KK+
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
Score = 32.3 bits (70), Expect = 0.86
Identities = 19/41 (46%), Positives = 20/41 (48%)
Frame = -3
Query: 180 KXKKKKKKKXXXKXXKXXXXXXXXXXXXKXKKXKKKXKKKK 58
K KKKKKKK K K K KK KKK KKK+
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
Score = 30.3 bits (65), Expect = 3.5
Identities = 22/46 (47%), Positives = 22/46 (47%)
Frame = -3
Query: 195 KXXXKKXKKKKKKKXXXKXXKXXXXXXXXXXXXKXKKXKKKXKKKK 58
K KK KKKKKKK K K K KK KKK KKKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKK------NKKKKKKKKKKKKKKKKKK 107
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/58 (39%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +1
Query: 13 PXHG-PPCXTAPXXXXFFFFXFFFXFFXXXXXXXXXXXXXXFXXFXXXFFFFFFFXFF 183
P G P T FFFF FFF FF F FFFFFFF FF
Sbjct: 46 PEEGLPRVATVGSKEDFFFFFFFFFFF-----------------FFFFFFFFFFFFFF 86
Score = 31.1 bits (67), Expect = 2.0
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 154 FFFFFFFXFFXXXFXXXXXXFFXF 225
FFFFFFF FF F FF F
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFFF 85
Score = 31.1 bits (67), Expect = 2.0
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 154 FFFFFFFXFFXXXFXXXXXXFFXF 225
FFFFFFF FF F FF F
Sbjct: 63 FFFFFFFFFFFFFFFFFFFFFFFF 86
Score = 29.9 bits (64), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 134 FXFLXXXFFFFFFFXFFXXXF 196
F F FFFFFFF FF F
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFF 82
Score = 29.9 bits (64), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 134 FXFLXXXFFFFFFFXFFXXXF 196
F F FFFFFFF FF F
Sbjct: 63 FFFFFFFFFFFFFFFFFFFFF 83
Score = 29.9 bits (64), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 134 FXFLXXXFFFFFFFXFFXXXF 196
F F FFFFFFF FF F
Sbjct: 64 FFFFFFFFFFFFFFFFFFFFF 84
Score = 29.9 bits (64), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 134 FXFLXXXFFFFFFFXFFXXXF 196
F F FFFFFFF FF F
Sbjct: 65 FFFFFFFFFFFFFFFFFFFFF 85
Score = 29.9 bits (64), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 134 FXFLXXXFFFFFFFXFFXXXF 196
F F FFFFFFF FF F
Sbjct: 66 FFFFFFFFFFFFFFFFFFFFF 86
>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
Length = 60
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 256 PXKGG-GXXPXKKKKKXXXGGKKKKXXXKKKXXLGKR 363
P KGG P KKKKK KKKK KKK K+
Sbjct: 18 PAKGGLRGLPKKKKKKKKKKKKKKKKKKKKKKKKKKK 54
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 30.3 bits (65), Expect = 3.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 513 PPXXPXXGXFFXXKXXPPPPPPX*KKXXTHXFXPF 409
PP P G PPPPPP KK PF
Sbjct: 1935 PPPPPVEGKPKPPPHAPPPPPPEAKKSFMRRMFPF 1969
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 26.2 bits (55), Expect(2) = 3.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 513 PPXXPXXGXFFXXKXXPPPPP 451
PP P G F PPPPP
Sbjct: 652 PPPAPGIGNKFPAPPPPPPPP 672
Score = 22.2 bits (45), Expect(2) = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 474 KXXPPPPPP 448
K PPPPPP
Sbjct: 687 KGPPPPPPP 695
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 29.9 bits (64), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 134 FXFLXXXFFFFFFFXFFXXXF 196
F F FFFFFFF FF F
Sbjct: 87 FFFFFFFFFFFFFFFFFFFFF 107
Score = 29.9 bits (64), Expect = 4.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 134 FXFLXXXFFFFFFFXFFXXXF 196
F F FFFFFFF FF F
Sbjct: 88 FFFFFFFFFFFFFFFFFFFFF 108
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 154 FFFFFFFXFFXXXFXXXXXXFF 219
FFFFFFF FF F FF
Sbjct: 87 FFFFFFFFFFFFFFFFFFFFFF 108
>07_01_0176 - 1244704-1245102
Length = 132
Score = 29.5 bits (63), Expect = 6.0
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 448 GGGGGGXXFXXKKXXPPGGXG 510
GGGGGG F PPGG G
Sbjct: 41 GGGGGGGFFEVPWFGPPGGGG 61
>09_06_0289 - 22053561-22055666,22055745-22055771
Length = 710
Score = 29.1 bits (62), Expect = 8.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 90 KKXKKKXKKKKXXVXXGSXTRWPVXW 13
KK KKK KKKK + S RW W
Sbjct: 21 KKKKKKKKKKKMMIDVWSAVRWWDEW 46
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 29.1 bits (62), Expect = 8.0
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 237 FXXXKXKKXXXXXXKXXXKKXKKKKKKKXXXKXXK 133
F K KK K KK KKKKKKK K K
Sbjct: 39 FEEGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,543,498
Number of Sequences: 37544
Number of extensions: 328997
Number of successful extensions: 4314
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3292
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4027319592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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