Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L05.2
         (1292 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   5.4  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   5.4  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    26   8.7  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -3

Query: 579 PPPPLCXRVFFWXXXGXXX*XKPPXXPXXGXFFXXKXXPPPPPP 448
           PPPP   + F            PP  P  G        PPPPPP
Sbjct: 611 PPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 654


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -3

Query: 579 PPPPLCXRVFFWXXXGXXX*XKPPXXPXXGXFFXXKXXPPPPPP 448
           PPPP   + F            PP  P  G        PPPPPP
Sbjct: 437 PPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPP 480


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 26.2 bits (55), Expect(2) = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 606 PPLXGXXFXPPPPLC 562
           PP+    F PPPP+C
Sbjct: 48  PPICPPQFCPPPPMC 62



 Score = 21.0 bits (42), Expect(2) = 8.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 465 PPPPPP 448
           PPPPPP
Sbjct: 65  PPPPPP 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,429,341
Number of Sequences: 27780
Number of extensions: 178902
Number of successful extensions: 1197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3620756926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)