Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_L03.2
         (1704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    30   1.1  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    28   4.5  

>SPCC794.08 |||HEAT repeat protein, unknown biological
            role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = -1

Query: 1359 PFWLLLIFVC-TCLASSXRLMETFLSSRAR*SIDANSEPSKLIRSVINSDFRKFLKIKLN 1183
            P  L L+ VC TCL       E F          ANSE S  I+ V  + F K    KLN
Sbjct: 389  PRRLYLLLVCITCLTKHQYYDEEFADVWREIDTLANSETSSAIQMVALTAFHKLQNEKLN 448

Query: 1182 ------FPVSPLQYFLIH 1147
                   P+S +  FL+H
Sbjct: 449  TKKESSAPLSLVTDFLLH 466


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 929

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 1059 WAFRTNEKGKSGKLYKNETFESRLVFAGERES-ENIAGGKLEN 1184
            W+F  ++ GKS K +KN      +    E +S +++   KLEN
Sbjct: 82   WSFNASKSGKSNKDHKNLNNTKEISLNEEDDSDDSVNSDKLEN 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,702
Number of Sequences: 5004
Number of extensions: 36186
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 973247434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)