Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_L01.2
(1247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 184 2e-47
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 105 1e-23
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 77 4e-15
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 33 0.063
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 31 0.33
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 1.0
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 1.8
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 3.1
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 5.4
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 27 5.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 7.2
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 7.2
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 184 bits (448), Expect = 2e-47
Identities = 84/178 (47%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Frame = +2
Query: 314 MRYAQLIVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 493
++ A + G A SGKST+C ++ + R +VNLDPAAE+F++EP VDIR+LI +D
Sbjct: 2 VKVAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISID 61
Query: 494 DAMEDEELKFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 673
D ME EL +GPNGGL++C E L+EN DWL E++GD D+DY++FD PGQIELYTH+P++
Sbjct: 62 DVME--ELDYGPNGGLIYCFEFLMENLDWLNEEIGDYDEDYLIFDMPGQIELYTHVPILP 119
Query: 674 RLV-DLLXNWNFXICVVFLVDSQFMIDGAKFLSXTMXXLSVMXXXXXXXXXXXXKMDL 844
L+ L NF C V+L++SQF++D KF + + +S M KMDL
Sbjct: 120 ALIRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKMDL 177
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 105 bits (252), Expect = 1e-23
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 1/178 (0%)
Frame = +2
Query: 314 MRYAQLIVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 493
M + Q++VGP GSGKSTYC + + R +VNLDPA + Y +DIR+++ ++
Sbjct: 1 MPFCQVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVE 60
Query: 494 DAMEDEELKFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 673
+D +L GPNG L++ +E + + +WL ++L D Y++FDCPGQ+EL+T+ ++
Sbjct: 61 MIQKDYDL--GPNGALIYAMEAIEYHVEWLLKELKKHRDSYVIFDCPGQVELFTNHNSLQ 118
Query: 674 RLVDLL-XNWNFXICVVFLVDSQFMIDGAKFLSXTMXXLSVMXXXXXXXXXXXXKMDL 844
+++ L ++ V LVD+ + + ++S + L M K DL
Sbjct: 119 KIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGMLQLDMPHVNILSKADL 176
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 77.4 bits (182), Expect = 4e-15
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Frame = +2
Query: 323 AQLIVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAM 502
A ++VG AGSGK+T+ + H + ++NLDPA + YE +DIR+ I+ + M
Sbjct: 10 AIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDTINYKEVM 69
Query: 503 EDEELKFGPNGGLVFCIETLLENSDW----LEEQLGDVDDDYILFDCPGQIELYTHLPVM 670
+ L GPNGG++ + + D LE++ V D+IL D PGQIE++
Sbjct: 70 KQYNL--GPNGGIMTSLNLFVTKFDQVLKILEKRAPTV--DHILIDTPGQIEIFQWSASG 125
Query: 671 RRLVDLLXNWNFXICVVFLVDSQFMIDGAKFLSXTMXXLSVM 796
+ D L + ++ C+ ++VD+ + ++S + S++
Sbjct: 126 SIICDTLAS-SWPTCIAYVVDTPRATSTSTWMSSMLYACSML 166
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 33.5 bits (73), Expect = 0.063
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 329 LIVGPAGSGKSTYCSTIVK-HXLDSKRIVD 415
++VGP+GSGKST +T+ H +DSK +D
Sbjct: 36 MVVGPSGSGKSTLINTLFSAHLMDSKGRLD 65
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 31.1 bits (67), Expect = 0.33
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 329 LIVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDP 433
++ GP GSGKS++ I L R + ++LDP
Sbjct: 335 MVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +2
Query: 332 IVGPAGSGKSTYCSTIVKH 388
I+GP+GSGKST+ S ++++
Sbjct: 467 IIGPSGSGKSTFISLLLRY 485
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 320 YAQLIVGPAGSGKSTYCSTI 379
Y LI+GP G+GKST S I
Sbjct: 34 YLNLIIGPNGTGKSTIVSAI 53
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 317 RYAQLIVGPAGSGKSTYCSTI 379
+Y +++GPAGSGK+T +
Sbjct: 14 KYVFVVIGPAGSGKTTMAKAV 34
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 560 LLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPV 667
L++N D + G+++DD I+F P ++ Y H+ V
Sbjct: 380 LVQNKDMEVDDGGEIEDDAIVFSVPPTLQEY-HVSV 414
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 650 YTHLPVMRRLVDLLXNWNFXICVV 721
Y HL V +R+ D+L W C V
Sbjct: 187 YAHLTVSKRMKDVLQTWGMNPCYV 210
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.6 bits (56), Expect = 7.2
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 329 LIVGPAGSGKSTYCSTIVKHXL-DSKRIVDVVNLDPAAEHFDYEPLVDI-REL-IHLDDA 499
+IVGP GSGKS I+ + VV L+ + D L +I R+L I L+
Sbjct: 579 IIVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGTYQTDDKLALREISRQLSIELESI 638
Query: 500 MEDEELK 520
DE LK
Sbjct: 639 ESDEALK 645
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 593 VAPLTSQNSLRGSQYKTLDHHLVQISIPHLP*HHQG 486
+ P +NSL S ++ HH PHLP +HQG
Sbjct: 146 IDPFEVKNSLHDSTDLSITHH------PHLPINHQG 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,108
Number of Sequences: 5004
Number of extensions: 57243
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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