Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_L01.2
(1247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984... 199 4e-51
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088... 151 1e-36
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841... 70 3e-12
03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423... 64 3e-10
11_03_0011 + 8934346-8934398,8936014-8936198,8936334-8936425,893... 30 4.4
02_02_0411 - 9928175-9928187,9928385-9928575,9929044-9929126,992... 30 4.4
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523... 29 7.6
02_04_0271 + 21445113-21445865,21446727-21446788,21446927-214470... 29 7.6
>03_05_0911 +
28697654-28697698,28698170-28698278,28698352-28698433,
28698486-28698514,28699472-28699567,28699860-28699963,
28700071-28700201,28700276-28700369,28701666-28701721,
28702728-28702821
Length = 279
Score = 199 bits (485), Expect = 4e-51
Identities = 107/213 (50%), Positives = 135/213 (63%), Gaps = 15/213 (7%)
Frame = +2
Query: 314 MRYAQLIVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 493
M YAQL++GPAGSGKSTYCS++ +H R + +VNLDPAAEHF Y DIRELI LD
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYPVSTDIRELISLD 60
Query: 494 DAMEDEELKFGPNGGLVFCIETL------------LENS--DWLEEQL-GDVDDDYILFD 628
D ME EL GPNGGL++C+E L LE++ DWL+EQL G +DDDY++FD
Sbjct: 61 DVME--ELGMGPNGGLIYCMELLKLLTDPSENHRHLEDNLDDWLDEQLEGYLDDDYLVFD 118
Query: 629 CPGQIELYTHLPVMRRLVDLLXNWNFXICVVFLVDSQFMIDGAKFLSXTMXXLSVMXXXX 808
CPGQIEL+TH+PV+R V+ L NF +C V+L+DSQF+ D K++S M LS M
Sbjct: 119 CPGQIELFTHVPVLRNFVEHLKRKNFNVCAVYLLDSQFVSDVTKYISGCMASLSAMIQLE 178
Query: 809 XXXXXXXXKMDLXXKXXXKXIXNXLXPDPXVLL 907
KMDL K + L P+ VLL
Sbjct: 179 LPHINILSKMDLVSN--KKDVEEYLNPEAQVLL 209
>03_02_0933 -
12505196-12505286,12505759-12505814,12508780-12508873,
12508949-12509079,12509187-12509290,12509585-12509680,
12510752-12510860,12511252-12511296
Length = 241
Score = 151 bits (365), Expect = 1e-36
Identities = 86/199 (43%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
Frame = +2
Query: 314 MRYAQLIVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 493
M YAQL++GPAGSGKSTYCS++ +H R + +VNLDPAAEHF Y V HL+
Sbjct: 1 MGYAQLVIGPAGSGKSTYCSSLYQHCETVGRTIHMVNLDPAAEHFSYP--VSTENHRHLE 58
Query: 494 DAMEDEELKFGPNGGLVFCIETLLENSDWLEEQL-GDVDDDYILFDCPGQIELYTHLPVM 670
D ++D WL+EQL G +DDDY++FDCPGQIEL+TH+PV+
Sbjct: 59 DNLDD-----------------------WLDEQLDGYLDDDYLVFDCPGQIELFTHVPVL 95
Query: 671 RRLVDLLXNWNFXICVVFLVDSQFMIDGAKFLSXTMXXLSVMXXXXXXXXXXXXKMDLXX 850
R V+ L NF +C V+ +DSQF+ D K++S M LS M KMDL
Sbjct: 96 RNFVEHLKRKNFNVCAVYFLDSQFVSDVTKYISGCMASLSAMIQLELPHINILSKMDLVA 155
Query: 851 KXXXKXIXNXLXPDPXVLL 907
K + L P+ VLL
Sbjct: 156 N--KKDVEEYLNPEAQVLL 172
>02_04_0215 -
20983210-20983293,20983440-20983512,20984072-20984159,
20984232-20984388,20984472-20984575,20985045-20985119,
20985144-20985213
Length = 216
Score = 70.1 bits (164), Expect = 3e-12
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = +2
Query: 536 GLVFCIETLLENSDWLEEQLGD-VDDDYILFDCPGQIEL-YTHLPVMRRLVDLLXNWNFX 709
GLV+C++ L +N DWLEE+L ++D Y+LFD PGQ+EL + H + L+ N
Sbjct: 24 GLVYCMDYLEKNIDWLEEKLKPLIEDHYLLFDFPGQVELFFLHSNARSIIYKLIKKLNLR 83
Query: 710 ICVVFLVDSQFMIDGAKFLSXTMXXLSVMXXXXXXXXXXXXKMDL 844
+ V L+D+ D K++S + LS M K+DL
Sbjct: 84 LTAVHLIDAHLCCDPGKYVSALLLSLSTMLHMELPHINVLSKIDL 128
>03_02_0781 +
11141469-11141486,11141855-11141978,11142024-11142340,
11143219-11143509,11143751-11143956,11144048-11144327
Length = 411
Score = 63.7 bits (148), Expect = 3e-10
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 2/168 (1%)
Frame = +2
Query: 347 GSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDEELKFG 526
G+GK+T+ +V H S V+NLDPA + +DIR+ + + M +E G
Sbjct: 78 GTGKTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGANIDIRDTVRYKEVM--KEYGLG 135
Query: 527 PNGGLVFCIETLLENSDWLEEQLGDVDD--DYILFDCPGQIELYTHLPVMRRLVDLLXNW 700
PNGG++ + D + + D DY+L D PGQIE++T + + +
Sbjct: 136 PNGGILTSLNLFSTKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFAS- 194
Query: 701 NFXICVVFLVDSQFMIDGAKFLSXTMXXLSVMXXXXXXXXXXXXKMDL 844
F V ++VD+ F+S + S++ K+D+
Sbjct: 195 TFPTVVAYVVDTPRSTSPVTFMSNMLYACSILYKTRLPMILTFNKVDV 242
>11_03_0011 +
8934346-8934398,8936014-8936198,8936334-8936425,
8937699-8937768,8937856-8937971,8939050-8939146,
8939965-8940044,8940198-8940392,8940548-8940631,
8940709-8940769,8941530-8941590,8942023-8942116,
8942188-8942260,8942573-8942655,8943241-8943431,
8943563-8943572
Length = 514
Score = 29.9 bits (64), Expect = 4.4
Identities = 28/77 (36%), Positives = 36/77 (46%)
Frame = +2
Query: 332 IVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 511
+ G A SGKST C I+ D +R+V V E F Y L D EL+H+ D D
Sbjct: 81 VAGGASSGKSTVCKMIIDQLRD-QRVVVVTQ-----ESF-YYGLSD-EELVHVHDYNFDH 132
Query: 512 ELKFGPNGGLVFCIETL 562
F L+ C+E L
Sbjct: 133 PDAFDTE-LLLSCMENL 148
>02_02_0411 -
9928175-9928187,9928385-9928575,9929044-9929126,
9929444-9929516,9929588-9929681,9930100-9930160,
9930824-9930884,9930963-9931046,9931196-9931390,
9931526-9931605,9932595-9932691,9934198-9934313,
9934407-9934476,9935439-9935530,9935661-9935823
Length = 490
Score = 29.9 bits (64), Expect = 4.4
Identities = 28/77 (36%), Positives = 36/77 (46%)
Frame = +2
Query: 332 IVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMEDE 511
+ G A SGKST C I+ D +R+V V E F Y L D EL+H+ D D
Sbjct: 56 VAGGASSGKSTVCKMIIDQLRD-QRVVVVTQ-----ESF-YYGLSD-EELVHVHDYNFDH 107
Query: 512 ELKFGPNGGLVFCIETL 562
F L+ C+E L
Sbjct: 108 PDAFDTE-LLLSCMENL 123
>06_01_0718 +
5233030-5233062,5233329-5233383,5233543-5233660,
5233746-5233902,5234033-5234113,5234213-5234320,
5234448-5234483
Length = 195
Score = 29.1 bits (62), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 332 IVGPAGSGKSTYCSTIVKH 388
++G GSGK T CS IV+H
Sbjct: 28 VLGGPGSGKGTQCSNIVEH 46
>02_04_0271 +
21445113-21445865,21446727-21446788,21446927-21447027,
21447165-21447248,21448054-21448058,21448193-21448267,
21448339-21448416,21448896-21448952,21449351-21449421,
21449529-21449628,21449758-21449862,21450004-21450066,
21450144-21450266,21450371-21450514,21450598-21450672
Length = 631
Score = 29.1 bits (62), Expect = 7.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 329 LIVGPAGSGKSTYCSTIVKHXLDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDD 496
L++GP GSGK+ T+ + I D L A+ D+ + ++++D+
Sbjct: 298 LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQASRVADFNVQAAQQGMVYIDE 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,607,354
Number of Sequences: 37544
Number of extensions: 337469
Number of successful extensions: 872
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3852724812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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