Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K24.2
         (1251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    65   2e-11
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    65   2e-11
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    58   3e-09
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    56   1e-08
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac...    34   0.047
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    31   0.44 
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    30   0.58 
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    30   0.77 
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    29   1.0  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    29   1.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    28   2.3  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    28   3.1  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   7.2  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 25/79 (31%), Positives = 49/79 (62%)
 Frame = +2

Query: 461 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 640
           ++ ER  RP NAF+++ + +   +   NP ++NS++SK +G  W++ S+  +  +   ++
Sbjct: 98  TSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157

Query: 641 RLRAVHMKEHPDYKYRPRR 697
             +A H K +P YKY+PR+
Sbjct: 158 FYKAQHQKMYPGYKYQPRK 176


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 25/79 (31%), Positives = 49/79 (62%)
 Frame = +2

Query: 461 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 640
           ++ ER  RP NAF+++ + +   +   NP ++NS++SK +G  W++ S+  +  +   ++
Sbjct: 98  TSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157

Query: 641 RLRAVHMKEHPDYKYRPRR 697
             +A H K +P YKY+PR+
Sbjct: 158 FYKAQHQKMYPGYKYQPRK 176


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 29/85 (34%), Positives = 55/85 (64%)
 Frame = +2

Query: 476 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 655
           VKRP+N+FM++ R ++ ++ + N   H S IS+ +G  W++ S   K+ + D +   R  
Sbjct: 16  VKRPLNSFMLYRRDRQAEIPTSN---HQS-ISRIIGQLWRNESAQVKKYYSDLSALERQK 71

Query: 656 HMKEHPDYKYRPRRKTKTLAKKQEK 730
           HM E+P+YKY P++++ T+ ++ +K
Sbjct: 72  HMLENPEYKYTPKKRS-TVRRRHKK 95


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 26/86 (30%), Positives = 48/86 (55%)
 Frame = +2

Query: 452 SKNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFID 631
           S+  +    KR M+AFM +S   R KM +DNP     ++   LG +WK+L+ +E+ P+ +
Sbjct: 8   SRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEE 67

Query: 632 EAKRLRAVHMKEHPDYKYRPRRKTKT 709
           +A++ +  + +E  +Y  +     KT
Sbjct: 68  KARQDKERYERERKEYDTKLANGEKT 93


>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
 Frame = +2

Query: 479 KRPMNAFMVWSRGQRR--KMASDN--PKMHNSEISKRLGAQ--WKDLSESEKRPFIDEAK 640
           K+P +AF+++ +  R   K+  +   P+  ++ + +   A   WK+L+E +K+PFID++K
Sbjct: 148 KKPSSAFILFYKELRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKKPFIDKSK 207

Query: 641 RLRAVHMK 664
            L+  + K
Sbjct: 208 ALKEQYDK 215


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 518  QRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYK 682
            ++R       +   +EI  +LG  W+ L    K+P++DE    RA +     +Y+
Sbjct: 867  KQRVTGDPEARATKNEIRAKLGKTWRALDSLGKQPWVDEINARRANYSTRLEEYQ 921


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 518  QRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 658
            +RR       K   +E   +LG  W+ L +  K+P+IDE    R  +
Sbjct: 1141 KRRLTGDSTAKATINETRAKLGKTWRQLDDLGKKPWIDEIAAQREAY 1187


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = +2

Query: 497 FMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPD 676
           F  +S  Q+ K+ ++   +    + K L   W +L+E EK+P+    + L A   K    
Sbjct: 202 FNHFSSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPY---HEGLLAAREKAREA 258

Query: 677 YKYRPRRKTKTLAKKQEK 730
            + R  + +  L K++ K
Sbjct: 259 RRRRSAQNSAKLEKEKAK 276


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 482 RPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE-AKRLRAVH 658
           RP+ AF V++R     +  D+ +   S +SK+ G+QW+    S+  P +DE AK  + VH
Sbjct: 26  RPV-AFHVFTRKYDLNINRDSLQELASFVSKKCGSQWR----SQCEPLLDEIAKTWKRVH 80


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 542 NPKMHNSEISKRLGAQWKDLSESE-KRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLAK 718
           NPK +   + KRL A  + L++ E    F   ++ L  V  +   + +YR   + K   K
Sbjct: 260 NPKGYTIPLDKRLAADGRGLNDVEINDGFAKFSEALYTVERQAREEVRYRAIMRQKMAEK 319

Query: 719 -KQEK 730
            KQEK
Sbjct: 320 EKQEK 324


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +2

Query: 761 ATEAQRSAAPTAQQPRDVYQMTPNGYMPNGYMMHXPSAYQQQAYGYP 901
           A+ A  + AP A Q R  Y   P  Y P G     P  Y  Q   YP
Sbjct: 79  ASSAAPAPAPAASQNR-AYGAAPQPYPPQGGYPQQPYYYPNQPNYYP 124


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 557 NSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDY 679
           N+E  +++   W  LSESE+R  +   K      MKE   Y
Sbjct: 255 NTEEREQIREFWLSLSESERRSLVKVEKEAVLQKMKEQQKY 295


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +2

Query: 455 KNSNAERVKRPM---NAFMVWSRGQRRKMASDNPKMHNSEISKRL 580
           +NS  E+V R +   N  ++   G+R+K+AS++ K H    S +L
Sbjct: 552 RNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSNKYHPIVSSNQL 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,863
Number of Sequences: 5004
Number of extensions: 52696
Number of successful extensions: 162
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 677627698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)