Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_K24.2
(1251 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 165 8e-41
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 163 2e-40
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 121 9e-28
U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 111 8e-25
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 109 4e-24
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 109 4e-24
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 109 4e-24
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 109 4e-24
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 109 4e-24
U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical pr... 91 2e-18
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 64 3e-10
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 64 3e-10
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 64 3e-10
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 59 7e-09
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 57 2e-08
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 48 2e-05
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 40 0.004
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 37 0.026
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 37 0.026
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 37 0.026
U70852-12|AAK29819.1| 204|Caenorhabditis elegans Hmg protein 5 ... 35 0.14
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 35 0.14
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 35 0.14
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 35 0.14
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 35 0.14
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 32 0.98
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 29 6.9
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 6.9
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 165 bits (400), Expect = 8e-41
Identities = 73/86 (84%), Positives = 80/86 (93%)
Frame = +2
Query: 464 NAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 643
N +RVKRPMNAFMVWSRGQR+KMA +NPKMHNSEISKRLG +WK LSE EKRPFIDEAKR
Sbjct: 56 NDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAKR 115
Query: 644 LRAVHMKEHPDYKYRPRRKTKTLAKK 721
LRA+HMKEHPDYKYRPRRKTK++ KK
Sbjct: 116 LRAIHMKEHPDYKYRPRRKTKSINKK 141
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 163 bits (396), Expect = 2e-40
Identities = 73/89 (82%), Positives = 80/89 (89%)
Frame = +2
Query: 461 SNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAK 640
++ + VKRPMNAFMVWSRGQRRKMA DNPKMHNSEISKRLGA+WK LSE EKRPFIDEAK
Sbjct: 43 NSLDHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAK 102
Query: 641 RLRAVHMKEHPDYKYRPRRKTKTLAKKQE 727
RLRA+HMKEHPDYKYRPRRK K+ KQ+
Sbjct: 103 RLRALHMKEHPDYKYRPRRKPKSSNLKQQ 131
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 121 bits (292), Expect = 9e-28
Identities = 56/116 (48%), Positives = 77/116 (66%)
Frame = +2
Query: 455 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 634
K+SN +KRPMNAFMVWS+ +RRK+ P MHN+EISK+LG++W+ L++ EK PF+ E
Sbjct: 88 KSSN--HIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAE 145
Query: 635 AKRLRAVHMKEHPDYKYRPRRKTKTLAKKQEKYPXXXXXXXXATEAQRSAAPTAQQ 802
A+RLR HM+E+PDYKY+PR+K K + P R A+P A+Q
Sbjct: 146 AERLRVCHMQEYPDYKYKPRKKPKKNPDGTLQQPAQPQAPQQQQAPPRGASPQARQ 201
>U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform b protein.
Length = 199
Score = 111 bits (268), Expect = 8e-25
Identities = 49/57 (85%), Positives = 53/57 (92%)
Frame = +2
Query: 551 MHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLAKK 721
MHNSEISKRLG +WK LSE EKRPFIDEAKRLRA+HMKEHPDYKYRPRRKTK++ KK
Sbjct: 1 MHNSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKEHPDYKYRPRRKTKSINKK 57
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 109 bits (262), Expect = 4e-24
Identities = 45/75 (60%), Positives = 59/75 (78%)
Frame = +2
Query: 476 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 655
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 178 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 237
Query: 656 HMKEHPDYKYRPRRK 700
HM++HPDY+YRPR K
Sbjct: 238 HMEQHPDYRYRPRPK 252
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 109 bits (262), Expect = 4e-24
Identities = 45/75 (60%), Positives = 59/75 (78%)
Frame = +2
Query: 476 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 655
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 175 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 234
Query: 656 HMKEHPDYKYRPRRK 700
HM++HPDY+YRPR K
Sbjct: 235 HMEQHPDYRYRPRPK 249
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 109 bits (262), Expect = 4e-24
Identities = 45/75 (60%), Positives = 59/75 (78%)
Frame = +2
Query: 476 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 655
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 281 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 340
Query: 656 HMKEHPDYKYRPRRK 700
HM++HPDY+YRPR K
Sbjct: 341 HMEQHPDYRYRPRPK 355
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 109 bits (262), Expect = 4e-24
Identities = 45/75 (60%), Positives = 59/75 (78%)
Frame = +2
Query: 476 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 655
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 329 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 388
Query: 656 HMKEHPDYKYRPRRK 700
HM++HPDY+YRPR K
Sbjct: 389 HMEQHPDYRYRPRPK 403
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 109 bits (262), Expect = 4e-24
Identities = 45/75 (60%), Positives = 59/75 (78%)
Frame = +2
Query: 476 VKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAV 655
+KRPMNAFMVW+R +RRK+ P MHNS ISK LG++WK +S SEK+P+ +E RL +
Sbjct: 329 IKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKL 388
Query: 656 HMKEHPDYKYRPRRK 700
HM++HPDY+YRPR K
Sbjct: 389 HMEQHPDYRYRPRPK 403
>U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical
protein C12D12.5 protein.
Length = 241
Score = 91.1 bits (216), Expect = 2e-18
Identities = 44/101 (43%), Positives = 62/101 (61%), Gaps = 17/101 (16%)
Frame = +2
Query: 455 KNSNAERVKRPMNAFMV-----------------WSRGQRRKMASDNPKMHNSEISKRLG 583
+ + R+KRPMNAFMV WS+ +R+++A+ K HNS+ISK LG
Sbjct: 78 RTAREPRIKRPMNAFMVINVQTWKIRKSNDYIKVWSQQRRQQIAATGQKFHNSDISKMLG 137
Query: 584 AQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTK 706
A+W+ + E EK PF++ AK+LR H HPDY YRPRR+ +
Sbjct: 138 AEWRKMEEHEKVPFVERAKQLREEHFNAHPDYVYRPRRRKR 178
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 63.7 bits (148), Expect = 3e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +2
Query: 458 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 637
++N V+RPMNAFM++S+ R + P N +SK LG W L+ +K + A
Sbjct: 837 SANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLA 896
Query: 638 KRLRAVHMKEHPDYKYRPRRK 700
+++ H K HPD+K+ + K
Sbjct: 897 TQVKEAHFKAHPDWKWSTKEK 917
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 63.7 bits (148), Expect = 3e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +2
Query: 458 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 637
++N V+RPMNAFM++S+ R + P N +SK LG W L+ +K + A
Sbjct: 837 SANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLA 896
Query: 638 KRLRAVHMKEHPDYKYRPRRK 700
+++ H K HPD+K+ + K
Sbjct: 897 TQVKEAHFKAHPDWKWSTKEK 917
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 63.7 bits (148), Expect = 3e-10
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +2
Query: 458 NSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEA 637
++N V+RPMNAFM++S+ R + P N +SK LG W L+ +K + A
Sbjct: 72 SANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLA 131
Query: 638 KRLRAVHMKEHPDYKYRPRRK 700
+++ H K HPD+K+ + K
Sbjct: 132 TQVKEAHFKAHPDWKWSTKEK 152
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 58.8 bits (136), Expect = 7e-09
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Frame = +2
Query: 455 KNSNAERVKRPMNAFMVWSRGQRRKMASD--NPKMHNSEISKRLGAQWKDLSESEKRPFI 628
K + VK+P+NAFM + + R+ + + N + ++E++K LG +W DLS+ E+ +
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKYF 243
Query: 629 DEAKRLRAVHMKEHPDYKYRPR---RKTKTLAKKQEKYP 736
+ AK+ + H + +P++ R K KT ++ + P
Sbjct: 244 EMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDKSIP 282
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 57.2 bits (132), Expect = 2e-08
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +2
Query: 455 KNSNAERVKRPMNAFMVWSRGQRRKMASD---NPKMHNSEISKRLGAQWKDLSESEKRPF 625
K + VK+P+NAF VW + RK + N + ++E++K LG +W DLS+ E+ +
Sbjct: 185 KAKKDDHVKKPLNAF-VWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKY 243
Query: 626 IDEAKRLRAVHMKEHPDYKYRPR---RKTKTLAKKQEKYP 736
+ AK+ + H + +P++ R K KT ++ + P
Sbjct: 244 FEMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDKSIP 283
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 47.6 bits (108), Expect = 2e-05
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +2
Query: 455 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDE 634
K + KR A+++W R M D + +++K+ GA+WK +S +K+ + D+
Sbjct: 554 KTKDPNEPKRATTAYIIWFNANRNSMKEDGDTL--GDVAKKAGAKWKSMSADDKKEWNDK 611
Query: 635 AKRLRAVHMKEHPDYK 682
A + +A + E +YK
Sbjct: 612 AAQDKARYEAEMKEYK 627
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 39.9 bits (89), Expect = 0.004
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +2
Query: 479 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 658
+RP+ +M +SR K+ ++NP+ +I K +G W DL + EK + E + +A +
Sbjct: 27 ERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKADY 86
Query: 659 MKE 667
K+
Sbjct: 87 EKQ 89
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 37.1 bits (82), Expect = 0.026
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +2
Query: 491 NAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 625
+ ++++S R+++ +NP E+SK +G +WK LSE +K+ +
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 1498
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 37.1 bits (82), Expect = 0.026
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +2
Query: 491 NAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 625
+ ++++S R+++ +NP E+SK +G +WK LSE +K+ +
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 1498
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 37.1 bits (82), Expect = 0.026
Identities = 14/45 (31%), Positives = 29/45 (64%)
Frame = +2
Query: 491 NAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPF 625
+ ++++S R+++ +NP E+SK +G +WK LSE +K+ +
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 128
>U70852-12|AAK29819.1| 204|Caenorhabditis elegans Hmg protein 5
protein.
Length = 204
Score = 34.7 bits (76), Expect = 0.14
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 551 MHNSEISKRLGAQWKDLSESEKRPFIDEAKRLR 649
M + E K AQWK ++S+K+ + DEAK+L+
Sbjct: 152 MESKEKMKEAVAQWKAFTDSQKKKYTDEAKKLK 184
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +2
Query: 521 RRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRK 700
+ ++ M +++ K L +WK LS SEK + + +K A + + ++K
Sbjct: 42 KENFKANTSDMKRTDLMKELSGKWKALSISEKDKYTELSKNYNAQKLDDFMKLSTEEQKK 101
Query: 701 TKTLAKKQE 727
AK+++
Sbjct: 102 LVDSAKEKK 110
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +2
Query: 479 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 658
KR ++AF +S+ +R ++ + +P ++++ LG WK + + K + +A+ + +
Sbjct: 135 KRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRY 194
Query: 659 MKEHPDYK 682
E +YK
Sbjct: 195 ADEMRNYK 202
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 473 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 643
R K F V + K N + +EISK+ +WK + + EKR F + A++
Sbjct: 45 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 101
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +2
Query: 479 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 658
KR ++AF +S+ +R ++ + +P ++++ LG WK + + K + +A+ + +
Sbjct: 134 KRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRY 193
Query: 659 MKEHPDYK 682
E +YK
Sbjct: 194 ADEMRNYK 201
Score = 33.9 bits (74), Expect = 0.24
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = +2
Query: 473 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRA 652
R K F V + K N + +EISK+ +WK + + EKR F + A++
Sbjct: 46 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAE 105
Query: 653 VHMKEHPDYKYRPRRKTKTLAKKQEKYP 736
+ E Y + + AKK P
Sbjct: 106 RYQAEVAAYGGEDAMRKRKRAKKDPHAP 133
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +2
Query: 479 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 658
KR ++AF +S+ +R ++ + +P ++++ LG WK + + K + +A+ + +
Sbjct: 136 KRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRY 195
Query: 659 MKEHPDYK 682
E +YK
Sbjct: 196 ADEMRNYK 203
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 473 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 643
R K F V + K N + +EISK+ +WK + + EKR F + A++
Sbjct: 46 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 102
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 34.7 bits (76), Expect = 0.14
Identities = 16/68 (23%), Positives = 37/68 (54%)
Frame = +2
Query: 479 KRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVH 658
KR ++AF +S+ +R ++ + +P ++++ LG WK + + K + +A+ + +
Sbjct: 136 KRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRY 195
Query: 659 MKEHPDYK 682
E +YK
Sbjct: 196 ADEMRNYK 203
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 473 RVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKR 643
R K F V + K N + +EISK+ +WK + + EKR F + A++
Sbjct: 46 RGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQK 102
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 31.9 bits (69), Expect = 0.98
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +2
Query: 455 KNSNAERVKRPMNAFMVWSRGQRRKMASDNPKMHNSEISKRLGAQWKDLSESE-KRPF-I 628
K+ + + K+P A S + +K + K SE SK+ + K +SE + +RP +
Sbjct: 72 KSKDVDEAKKPDPANSKKSN-KSKKPEKGSKKSKKSEKSKKKKTEEKVMSEDKPERPDKL 130
Query: 629 DEAKRLRAVHMKEHPDYKYRPRRKTKTLAKKQEK 730
E ++ A KE K + + KTK K QEK
Sbjct: 131 TEEEKPDAKEKKEIEKEKTKEKEKTKEKEKTQEK 164
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 793 GTTTPRRLSNDTKRLHAQRIYDARXQCVSTT 885
G++TPR L++ K H QR+YDA+ +TT
Sbjct: 80 GSSTPRTLAHLDKIPHKQRVYDAKIPKKNTT 110
>Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical
protein W02D9.3 protein.
Length = 386
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +2
Query: 524 RKMASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKT 703
R+ + M EI+ L A W+ L+ E+ PF A + +++ +YK
Sbjct: 141 RRASYSKAVMSQREINISLAADWQKLTAEERIPFQQRADEEKVKYLELMEEYKKTDSH-- 198
Query: 704 KTLAKKQEKY 733
K KK+ K+
Sbjct: 199 KEFQKKRAKF 208
>Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical
protein C49C3.11 protein.
Length = 404
Score = 29.5 bits (63), Expect = 5.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 503 VWSRGQRRKMASDNPKMHNSEISKRLGAQWKD 598
+W RRK D ++ +E SK L QW D
Sbjct: 270 IWVGAYRRKACWDKKNLNKTECSKELQYQWTD 301
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 29.1 bits (62), Expect = 6.9
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 533 ASDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTL 712
A DN K H+ E K + Q K EKR ++A R H+ H + ++K +
Sbjct: 195 AQDNQKYHDEERKKHIETQKKAEENEEKRRAKEKAD--RDAHVARHKQAEALEKKKREQE 252
Query: 713 AKKQEK 730
K++ +
Sbjct: 253 EKQKNE 258
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 29.1 bits (62), Expect = 6.9
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +2
Query: 536 SDNPKMHNSEISKRLGAQWKDLSESEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLA 715
SD+P +H+S++S G + ++L ES ++ I +R+ + E+ + + RK
Sbjct: 2850 SDDPSVHSSQVS--CGEESEELPESPEKSPIKIPRRIS--ELDENDESRRNSLRKGSP-N 2904
Query: 716 KKQEKYPXXXXXXXXATEAQR 778
K+ KY A EAQR
Sbjct: 2905 KQMMKYYSEVYESLKAVEAQR 2925
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,532,721
Number of Sequences: 27780
Number of extensions: 314868
Number of successful extensions: 850
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3474674514
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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