Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_K20.2
(1313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0309 + 16569201-16569468,16570310-16570534,16570860-16571176 25 1.2
08_02_0988 + 23346696-23347523 25 5.7
11_05_0077 - 18866707-18867334,18867410-18867555 25 7.5
12_01_0576 + 4705912-4706220,4706319-4706393,4707398-4707477,470... 29 8.1
05_01_0210 + 1583176-1584177 29 8.1
04_04_1582 - 34590698-34591199,34593849-34594690 29 8.1
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 29 8.1
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 24 8.5
10_01_0269 - 2865731-2865752,2866627-2868605 24 8.9
>07_03_0309 + 16569201-16569468,16570310-16570534,16570860-16571176
Length = 269
Score = 25.4 bits (53), Expect(2) = 1.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 121 GGGGGGGEXXXRKGE 77
GGGGGGGE R+ E
Sbjct: 46 GGGGGGGEKADREEE 60
Score = 25.0 bits (52), Expect(2) = 1.2
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 130 PXXGGGGGGGE 98
P GGGGGGGE
Sbjct: 16 PGGGGGGGGGE 26
>08_02_0988 + 23346696-23347523
Length = 275
Score = 25.0 bits (52), Expect(2) = 5.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 121 GGGGGGGEXXXRKGEG 74
GGGGGGGE + EG
Sbjct: 237 GGGGGGGETGDQLWEG 252
Score = 23.0 bits (47), Expect(2) = 5.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 130 PXXGGGGGGG 101
P GGGGGGG
Sbjct: 231 PQGGGGGGGG 240
>11_05_0077 - 18866707-18867334,18867410-18867555
Length = 257
Score = 24.6 bits (51), Expect(2) = 7.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 121 GGGGGGGEXXXRK 83
GGGGGGGE R+
Sbjct: 36 GGGGGGGEAGVRR 48
Score = 23.0 bits (47), Expect(2) = 7.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 130 PXXGGGGGGG 101
P GGGGGGG
Sbjct: 31 PAAGGGGGGG 40
>12_01_0576 +
4705912-4706220,4706319-4706393,4707398-4707477,
4707578-4707712,4708131-4708195,4708292-4708419,
4709108-4709364,4709457-4709982
Length = 524
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 35 SXXPSVPXLXASLPFXFSXXSFXPPPPPPXXR 130
S PS+P ++L S PPPPPP R
Sbjct: 8 SVHPSLPSSTSTLRLLISSSPRRPPPPPPRAR 39
>05_01_0210 + 1583176-1584177
Length = 333
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 14 PLHGAXLSXXPSVPXLXASLPFXFSXXSFXPPPPPP 121
P H S L AS P F+ PPPPPP
Sbjct: 3 PFHHLNSSFSNPYHPLLASPPHHFAPDPLPPPPPPP 38
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 121 GGGGGGGEXXXRKGEGQXSXXXRHRG 44
GGGGGGG KG + S R +G
Sbjct: 247 GGGGGGGGGHGEKGSAKSSEQERRKG 272
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 142 RXXXPXXGGGGGGGEXXXRKGEGQ 71
R P GGGGGGG R+G G+
Sbjct: 33 RDRYPRGGGGGGGGGEGPRRGYGR 56
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 23.8 bits (49), Expect(2) = 8.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 142 RXXXPXXGGGGGGG 101
R P GGGGGGG
Sbjct: 22 RGDVPGRGGGGGGG 35
Score = 23.4 bits (48), Expect(2) = 8.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 121 GGGGGGGEXXXRKGEG 74
GGGGGGG R G
Sbjct: 30 GGGGGGGAPPYRPASG 45
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 142 RXXXPXXGGGGGGG 101
R P GGGGGGG
Sbjct: 119 RISSPRSGGGGGGG 132
Score = 23.4 bits (48), Expect(2) = 8.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 121 GGGGGGGEXXXRKGEG 74
GGGGGGG G+G
Sbjct: 127 GGGGGGGGGGDDDGDG 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,590,796
Number of Sequences: 37544
Number of extensions: 367916
Number of successful extensions: 10440
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6808
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4108797156
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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