Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K19.2
         (1320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    32   0.15 
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    30   0.62 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    29   1.9  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    27   5.8  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 480 WVCHGRKCLTSHACTCPLMDAVCLECERGVW--EHGGRV--FRCCF 605
           ++C G  CL     T P    VC +C R  +  E  G+V   RCCF
Sbjct: 17  FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCF 62


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 558 ERGVWEHGGRVFRCCFCQG-FLCEDDQFEHQASCQVLES-ETYKCQSCNRIGQYSCLR 725
           E  VWE     F C FC   F C  D + H   C+   + + Y+ +  N +  Y+C++
Sbjct: 47  EEEVWEDEVHEFCCLFCDSTFTCLKDLWSH---CKEAHNFDFYQVKQQNNLDFYACIK 101


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 636 FEHQASCQVLESETYKCQSCNRIGQYSCLRCKTCF 740
           FEH  +   L S +  C +C +I +     C  CF
Sbjct: 46  FEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCF 80


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 684 CQSCNRIGQYSCLRCKTCFCEE 749
           C  C   G+Y+C  C T +C +
Sbjct: 102 CNVCGYWGKYACQNCGTSYCSK 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,510
Number of Sequences: 5004
Number of extensions: 62594
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)