Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K19.2
         (1320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   1.5  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   5.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   5.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   5.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   7.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 559 REVYGSMVVGFSGAVSAKDFCAKMTSLSIRPHVKFWNRKPTSVNRVTV 702
           R+ +    + F G + +     KM     RP   F+N K + V+ +TV
Sbjct: 90  RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITV 137


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 258 NIPXNVAMECXKCQKKQK 311
           N+P  +  EC  C +KQK
Sbjct: 66  NLPDALENECSPCSEKQK 83


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 684 CQSCNRIGQYSCLRCKTCFCEE 749
           C S    G+YSCL+    F  E
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKRE 240


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 684 CQSCNRIGQYSCLRCKTCFCEE 749
           C S    G+YSCL+    F  E
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKRE 240


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 258 NIPXNVAMECXKCQKKQK 311
           N+P  +  EC  C +KQK
Sbjct: 66  NLPDALENECSPCSEKQK 83


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
 Frame = +3

Query: 501 CLTSHACTCPLMDAVCLECERGVWEHGGRVFRCCFCQGFLCEDDQFEHQASCQVLESETY 680
           C TS      ++ A     E+ +  +    F  C C  F   D +    A C+     T+
Sbjct: 714 CRTSGPRGVAIVSASTARSEQFLCRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTW 773

Query: 681 KCQS--CNRIG 707
              +  C+ +G
Sbjct: 774 NTNAVDCSGLG 784


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,895
Number of Sequences: 438
Number of extensions: 4751
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45503877
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)