Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K17.2
         (1303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1326 - 26158279-26159712                                         34   0.21 
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694...    30   4.6  

>08_02_1326 - 26158279-26159712
          Length = 477

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 22/79 (27%), Positives = 37/79 (46%)
 Frame = -3

Query: 347 TLITFLTLAFCFSVHFPQLVAMVSGKAFLKSEASGVHRPLSRKQFI*AFNNLSLVTIGST 168
           T++  L L   F+VH+P L++     +   + A+G HR  SR        + + V  G  
Sbjct: 46  TILATLCLVCLFTVHYPSLLSHSFHLSSAAAAANGKHRAASRSSHRSLLGSSAAVAYGGA 105

Query: 167 SKFSYFERSAARQAANRQD 111
           +    +E+   R AA R+D
Sbjct: 106 A----WEKEVRRSAAPRRD 120


>01_06_0638 -
           30768546-30768779,30768908-30769017,30769301-30769490,
           30769842-30769914,30770007-30770063,30770147-30770211,
           30770278-30770488,30770568-30770650,30771123-30771158,
           30771611-30771713,30771813-30771899,30772210-30772403
          Length = 480

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 563 FHNCFCYS*ISLSKYVALINCD 628
           +H+C+C S +S+S+Y A+++ D
Sbjct: 420 YHSCYCLSGLSVSQYSAMVDSD 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,584,828
Number of Sequences: 37544
Number of extensions: 358385
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4062238548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)