Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_K11.2
(1331 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 84 4e-17
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 38 0.004
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 35 0.022
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 29 1.4
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 28 2.5
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 28 3.3
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 5.8
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 84.2 bits (199), Expect = 4e-17
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Frame = +2
Query: 503 GLTNERSKF-VVVNTTDSGEDIETDSEIEELDSDEWDECRIQESDSLIKPRDCLFCVHHS 679
G +E SK + + S E ++ +E +E + + S + PRDCLFC
Sbjct: 158 GRESEPSKTELATSIPQSNEASKSHLFTQEPTPEEIEAELARRSSQRLSPRDCLFCAASF 217
Query: 680 KNMVKNLKHMSEAHSFFIPDVEFCINIRGLLLYLGEKISQGYMCLWCNDTGRTFYSMEAA 859
+ KHM +HS +IP+ E+ ++ L YL EKIS G+ CL CN R F S+EA
Sbjct: 218 SSFDTCKKHMKASHSLYIPEREYLVDEPSLFDYLAEKISIGFTCLTCN---REFKSLEAV 274
Query: 860 RAHMIDKGHCKMLHE 904
RAHM KGH + ++
Sbjct: 275 RAHMQQKGHTSIAYD 289
Score = 35.1 bits (77), Expect = 0.022
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +2
Query: 314 EKQAXSQYCQCCSKLFSTKXSYNNHLNSKXHKVSVEKYTESQK 442
+K Q C+ C+K F ++ +Y++H+ SK H+ ++ K+ + +
Sbjct: 64 KKAEFYQNCEVCNKKFYSEGAYSSHMASKKHRDNLSKFQRNSR 106
Score = 29.9 bits (64), Expect = 0.83
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 172 FTXPXSNVSHXQXAWHRXDLKSKVASLEPVT 264
F S H + WH +LK KVASL P++
Sbjct: 14 FNNAESQKIHWKSDWHHYNLKRKVASLPPLS 44
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +2
Query: 338 CQCCSKLFSTKXSYNNHLNSKXHKVSVEKYTESQKDQENSGQSDTDSFVKVECTTGLTNE 517
C C+K F ++ NH NSK HK ++ K + K Q + +S + E +
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAESNKQPEDAPSESPY 331
Query: 518 RSKFVVVN-TTDSGEDIETDSEIEELDSDEW 607
+K + T S E+IE E+ +E+
Sbjct: 332 SNKVSSSDFYTRSFEEIEKTFTFVEISDNEF 362
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 35.1 bits (77), Expect = 0.022
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Frame = +2
Query: 281 ARAKAHXXSQN-EKQAXSQYCQCC-SKLFSTKXSYNNHLNSKXHKVSVEKYTESQKDQEN 454
+ +AH + N E + Q + SKL S SY + +N K H S + E + +
Sbjct: 567 SEGRAHLETANKENEILKQQLELSESKLASLLNSYQSFINKKEHLYSFLQLVEPSFAKSD 626
Query: 455 SGQSDTDSFVKVECTTGLTNERSKFVVVNTTDSGEDIETDSEIEELD 595
S + T+S + G++ F+V S I +++E+LD
Sbjct: 627 SSNA-TESQISESVRKGISIFNLLFIVYKNVCSQAGINPSTKLEDLD 672
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +2
Query: 275 FEARAKAHXXSQNEKQAXSQYCQCCSKLFSTKXSYNNHLNSKXHKVSVEKYTES 436
+ A+A ++ +A YC+ C K F + H SK H +V++ S
Sbjct: 226 YSHNAEAEKDGKDSTEAF--YCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSS 277
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 2.5
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +2
Query: 512 NERSKFVVVNTTDSGEDIETDSEIEELDSDEWDECRIQESDSLIKPRDCLFCVHHSKNMV 691
NE+ K+ + GE+ + ++E +E DS+E E ES + KP+ + + +
Sbjct: 355 NEK-KYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQ----VIDQTNASL 409
Query: 692 KNLKHMSEAHSFFIPDVEFCIN-IRGLLLYLGEKISQGYMCLWCNDTGRTF 841
NL+ D E C + + + L G++I M + CN RT+
Sbjct: 410 VNLRKSIYLTIMSSVDFEECCHKLLKIDLPEGQEIELCNMVIECNSQERTY 460
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 196 SHXQXAWHRXDLKSKVASLEPVT 264
SH + WHR + K K+ L PV+
Sbjct: 70 SHIKSDWHRFNTKRKITKLPPVS 92
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 803 YMCLWCNDTGRTFYSMEAARAHMIDKGHC 889
++CL C + G Y A+ H +D HC
Sbjct: 272 WICLICGNIGCGRYHDAHAKQHYVDTAHC 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,662
Number of Sequences: 5004
Number of extensions: 63429
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 731281504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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