Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_K10.2
(1270 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 33 0.084
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 32 0.19
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 29 1.8
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 2.4
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 3.2
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 5.5
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 7.3
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 27 7.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 9.6
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 33.1 bits (72), Expect = 0.084
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 303 LIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKH 416
LI + QV++ +RLRK+ + ++ E+ LL L+ ++H
Sbjct: 359 LIGKMSQVQIECKRLRKENLFLQSERTHLLRELEELRH 396
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 31.9 bits (69), Expect = 0.19
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Frame = +3
Query: 315 LDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSE--LLLDISE-C--DKDDITRYADR 479
L+ E+ +R+++D + E+ S+ + D I SE +L+ E C D D+I++ +
Sbjct: 188 LNSAELEWKRVQQDQLTSASER-SIENIADDIPASEPKAILENGEGCLNDNDNISKLKNN 246
Query: 480 ILSRAMTVEVTVRTDRDHQQEEALYQVNMYIDQLVMSVHNDAVS 611
S+A ++ + + D +++ +Y+D +M + ++ VS
Sbjct: 247 FQSQADLMQANINSKLDELSQKSTRAAQLYVD--IMGITDERVS 288
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.7 bits (61), Expect = 1.8
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 201 EVDQFALEIAYPEGSRLPLIDESSVLGTQAPKDRL-IAVLDQVEMRVERLRKDTVRIEEE 377
EV L IA+ +G +LP+ + T+ D + I ++ V R +T+R EE
Sbjct: 2644 EVIHIDLGIAFEQGKKLPVPECVPFRLTRDVVDGMGITGVEGVFRRCMEFTLETLRREE- 2702
Query: 378 KDSLLSTLDSIKHSEL 425
DSLLS L+ +++ L
Sbjct: 2703 -DSLLSVLEVLRYDPL 2717
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 243 SRLPLIDESSVLGTQAPKDRLIAVLDQVEMRVERLRKDTVRIEEEKD 383
S + L+DE++ + ++ VLD +E ++ +LR + +E EKD
Sbjct: 393 SAIDLVDEAAA-AVRVTRESQPEVLDNLERKLRQLRVEIRALEREKD 438
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 240 GSRLPLIDESSVLGT-QAPKDRLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK 413
GSR P ++ T Q DRL D+V + + + RK +E K++LL+ DS+K
Sbjct: 61 GSRKP--SSGQLIATMQNEIDRLKKEGDKVSILLMQERKKRKELESAKNNLLNVYDSLK 117
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +2
Query: 662 PQRGHRQEL*DGHPGLHPRRSEARQETTPRPAGLHREVKR 781
P H L D H L SE E TP PA L + KR
Sbjct: 542 PVLKHTSSLLDHHSPLATSSSEHEMEATPSPALLKKTNKR 581
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 312 LLSVCLSAPAFLEPRIRR*GVVVNPLDTQSLMQ 214
LL+ L AP PR+RR ++ +DT+S+ +
Sbjct: 270 LLTAALDAPYHDSPRVRRQDYLLGLIDTRSMSE 302
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 957 DYT*EDXXNIXIRKHSIQIQNTNAKAASDDRTTSRRLAKRPIKTPTCRRA 808
D T D SI +N+ + D +T+ +LAK + TPT R+
Sbjct: 217 DLTSADKSQPSDEAESITRKNSIGMSTRSDESTAEKLAKAEVATPTNSRS 266
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 195 TMEVDQFALEIAYPEGSRLPLIDESSVLGTQAPKDRLIAVLDQVEMRVERLRKDTVRIEE 374
T E ++ + + + L++E S L + D ++ D + + +R D VR+ +
Sbjct: 1150 TNEKNELIVSLEQSNSNNEALVEERSDLANRL-SDMKKSLSDSDNV-ISVIRSDLVRVND 1207
Query: 375 EKDSLLSTLDSI--KHSELLLD 434
E D+L DS+ ++SE+ D
Sbjct: 1208 ELDTLKKDKDSLSTQYSEVCQD 1229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,991,215
Number of Sequences: 5004
Number of extensions: 76879
Number of successful extensions: 230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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