Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_K10.2
(1270 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0396 - 3128047-3128273,3128350-3128632,3128717-3128874,312... 31 2.6
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 31 2.6
11_01_0412 + 3131673-3131903,3133192-3133971 30 3.4
03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693 29 5.9
02_05_0277 - 27390783-27391153,27391229-27391507,27391580-273919... 29 5.9
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 29 7.8
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206... 29 7.8
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 29 7.8
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 29 7.8
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 7.8
>12_01_0396 -
3128047-3128273,3128350-3128632,3128717-3128874,
3129097-3129314,3129682-3129912,3130630-3130691
Length = 392
Score = 30.7 bits (66), Expect = 2.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 749 RPAGLHREVKRDHVLVSGGHARRQVG 826
+PA +HR++K D++ ++G H + ++G
Sbjct: 129 KPAIIHRDLKCDNIFINGNHGKVKIG 154
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/84 (20%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 294 KDRLIAVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYA 473
KD+LI D + R+ + +++ +++ EEK+ ++ + K E ++++ + + +D + A
Sbjct: 485 KDKLIKEKDDIVFRLTKEKEEIIKLLEEKEDIIILM---KEKEDMVNLGKGEDEDRKQMA 541
Query: 474 DRILSRAMTV--EVTVRTDRDHQQ 539
D R + ++ VR ++ ++
Sbjct: 542 DDNKDRLIKEKDDIVVRLTKEKEE 565
>11_01_0412 + 3131673-3131903,3133192-3133971
Length = 336
Score = 30.3 bits (65), Expect = 3.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 768 RCSPAGLGVVS*RASDRRGCSPGWP-SQSSCRCPRWGPAETCTRSYRSGNGNAHSLRRCA 592
R P+G ++ A+ R PG S S CR P + C + SG G A +L C+
Sbjct: 193 RSMPSGQETLATTAASNRNHRPGATFSGSGCREPASAGSGLCKPASGSGGGAAKALGGCS 252
Query: 591 R 589
R
Sbjct: 253 R 253
>03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693
Length = 126
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Frame = +3
Query: 318 DQVEMRVERLRKDTV----RIEEEKDSLLSTLDSIK 413
D VE R+E++++D R+E+EK+S++S + +K
Sbjct: 75 DDVETRLEQMKEDAAKKLERLEQEKESIVSQMAELK 110
>02_05_0277 -
27390783-27391153,27391229-27391507,27391580-27391970,
27392042-27392199,27392755-27392975,27393059-27393286,
27394231-27394268,27394616-27394693
Length = 587
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 743 TPRPAGLHREVKRDHVLVSGGHARRQVGVL 832
T +P +HR++K D++ V+G H ++G L
Sbjct: 144 THQPPIIHRDLKCDNIFVNGNHGEVKIGDL 173
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 29.1 bits (62), Expect = 7.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 309 AVLDQVEMRVERLRKDTVRIEEEKDSLLSTLDSIK 413
A + Q+E ++E LRKD + E+DS L ++ K
Sbjct: 609 ARMAQMEKQIEALRKDKAELAAERDSALKEVEDRK 643
>05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,
2064156-2064288,2064400-2064578,2065228-2065495,
2066250-2066342,2066667-2066776,2066887-2066905,
2066985-2067170
Length = 374
Score = 29.1 bits (62), Expect = 7.8
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -2
Query: 1026 EKKKQHXILTDHCLSXRIKNTXTDYT*EDXXNIXIRKHSIQIQ---NTNAKAASDDRTTS 856
+K +H +L +H + R K+ + + S+Q+Q +T A+ D
Sbjct: 120 KKCVRHCLLREHTPATRPKSIFRNPVWHYNLYKIQKSESLQLQLAWSTPAQGFLDGSWLC 179
Query: 855 RRLAKRPIKTPTCRRACPPLTST 787
R L P T +C R PPL +T
Sbjct: 180 RALLAPPFHTDSCSRLPPPLMAT 202
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 29.1 bits (62), Expect = 7.8
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Frame = -2
Query: 693 SQSSC--RCPRWGPAETCTRSYRSGNGNAHSLRRCAR----TSPADRCTCSPDTELPPAD 532
++SSC R G C Y NGN + C T P D +P L A
Sbjct: 315 NESSCMDRFMGEGYVCRCKAGYDQHNGNPYEAGGCQAYSVITLPEDILALAPIIRLVMAT 374
Query: 531 GLGQCALSPL 502
G GQ AL+P+
Sbjct: 375 GQGQGALTPI 384
>04_04_0298 +
24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 29.1 bits (62), Expect = 7.8
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +3
Query: 366 IEEEKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTVRTDR 527
I +EK +L +++ IKH E++L E KDD T D +V + V +R
Sbjct: 639 IRDEKVKVLQSVNPIKHDEVVLGQYEGYKDDPTVPDDSNTPTFASVVLRVHNER 692
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.1 bits (62), Expect = 7.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 375 EKDSLLSTLDSIKHSELLLDISECDKDDITRYADRILSRAMTVEVTV 515
E+DS + S SEL+ +IS+ +++DIT D I + E+ V
Sbjct: 466 EQDSKIQEAVSASDSELISEISDVEQEDITDKGDVIDDGFLAEELNV 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,647,728
Number of Sequences: 37544
Number of extensions: 595827
Number of successful extensions: 1833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3934202376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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