Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K09.2
         (1292 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   5.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   5.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   7.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   7.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 355 NIFILIQQNGSKNSFTLEGIWNSIMCDPHYCNSRYLLRL 471
           +I     Q  +K+S+T+ G+  +I    H+C   Y +++
Sbjct: 433 SIIFANNQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKV 471


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 532 PRIMDSLNNDTLLGSNTDSIRLSRRQIRKKNY 627
           P+I+ SL+N T+  +N      +       NY
Sbjct: 312 PKIISSLSNKTIHNNNNYKYNYNNNNYNNNNY 343


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 807 VDRAPRTSFVAISPVYIGATVYTTP 733
           V R PR   V +S V++GA   + P
Sbjct: 151 VKRTPRRMIVYVSLVWLGAACISLP 175


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 583 DSIRLSRRQIRKKNYTASRSYTLHNRLDTCYRSEVLANAVRRA 711
           ++IR     +++  Y  +RS  +  + +  YR  +L +  RRA
Sbjct: 117 ETIRPVFSTLQRAEYPTNRSLFIREQTEEMYREMLLEHKKRRA 159


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 532 PRIMDSLNNDTLLGSNTDSIRLSRRQIRKKNYTASRSYTLHN 657
           P+I+ SL+N+T + +N      +       NY     Y + N
Sbjct: 78  PKIISSLSNNT-IHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 532 PRIMDSLNNDTLLGSNTDSIRLSRRQIRKKNYTASRSYTLHN 657
           P+I+ SL+N+T + +N      +       NY     Y + N
Sbjct: 78  PKIISSLSNNT-IHNNNYKYNYNNNNYNNNNYNKKLYYNIIN 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,858
Number of Sequences: 438
Number of extensions: 6842
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44423310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)