Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_K08.2
(1297 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 376 e-105
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 327 2e-90
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 173 3e-44
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 170 3e-43
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 151 2e-37
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 135 1e-32
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 132 8e-32
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 124 2e-29
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 117 3e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 114 3e-26
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 113 4e-26
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 112 1e-25
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 111 2e-25
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 108 2e-24
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 107 2e-24
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 107 2e-24
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 103 4e-23
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 96 1e-20
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 86 9e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 86 1e-17
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 85 2e-17
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 83 6e-17
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 63 9e-11
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 40 7e-04
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 34 0.049
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.80
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 1.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.4
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 4.3
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 5.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 7.5
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 27 7.5
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom... 27 7.5
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 9.9
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 9.9
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 376 bits (926), Expect = e-105
Identities = 176/248 (70%), Positives = 215/248 (86%)
Frame = +3
Query: 222 QVVXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSI 401
+V+ TFD M LK LL G YA GFE+PSA+QQRAIMP + R V+AQAQSGTGKTATFSI
Sbjct: 16 EVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSI 75
Query: 402 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 581
S+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT VR+D+ L+
Sbjct: 76 SVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQ 135
Query: 582 SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 761
+GVHVVVGTPGRV+DMI RRAL + +++FVLDEADEMLSRGFKDQI+D+F++L QV
Sbjct: 136 AGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQV 195
Query: 762 ILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELXXWKLETLCXLYDT 941
+LLSATMP DVLEV+ FMRDP+RILV+K+ELTLEGIKQFY+A+E WKL+TLC LY+T
Sbjct: 196 VLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYET 255
Query: 942 LSIAQAVI 965
+++ QAVI
Sbjct: 256 VTVTQAVI 263
Score = 30.7 bits (66), Expect = 0.46
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 965 FCNTRRKVDXLTESM 1009
FCNTRRKVD LTE +
Sbjct: 264 FCNTRRKVDWLTEQL 278
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 327 bits (803), Expect = 2e-90
Identities = 154/246 (62%), Positives = 196/246 (79%)
Frame = +3
Query: 228 VXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISI 407
V +F+ M LK LL G YA G+E PSAVQ RAI+ +GR VIAQAQSGTGKTATFSI I
Sbjct: 20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI 79
Query: 408 LQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 587
LQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+V DI++L+ G
Sbjct: 80 LQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139
Query: 588 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVIL 767
HVV GTPGRV DMI RR L +K+ +LDEADE+L++GFK+QI+D+++ L QV++
Sbjct: 140 QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVV 199
Query: 768 LSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELXXWKLETLCXLYDTLS 947
+SAT+P DVLE++ F +PVRILV+++ELTLEG+KQ++IA+E WK +TLC LYDTL+
Sbjct: 200 VSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLT 259
Query: 948 IAQAVI 965
I QAVI
Sbjct: 260 ITQAVI 265
Score = 30.3 bits (65), Expect = 0.61
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 965 FCNTRRKVDXLTESM 1009
FCN+RRKVD LTE M
Sbjct: 266 FCNSRRKVDWLTEKM 280
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 173 bits (422), Expect = 3e-44
Identities = 96/243 (39%), Positives = 138/243 (56%)
Frame = +3
Query: 237 FDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQQ 416
F+ LK LL G + GFE+PS +Q+ +I + GR ++A+A++GTGKTA F I L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 417 IDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHV 596
+DT + Q LIL PTRELA Q +V LG H+N K GGT +R+DI +L VH+
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHI 165
Query: 597 VVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSA 776
VVGTPGRV D+ + + FV+DEAD++LS F I + + Q+ L SA
Sbjct: 166 VVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSA 225
Query: 777 TMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELXXWKLETLCXLYDTLSIAQ 956
T P V + P I + +ELTL G+ Q+Y ++ K+ L L+ L I Q
Sbjct: 226 TFPLIVKNFMDKHLNKPYEINLM-DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQINQ 283
Query: 957 AVI 965
++I
Sbjct: 284 SII 286
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 170 bits (414), Expect = 3e-43
Identities = 95/250 (38%), Positives = 150/250 (60%), Gaps = 4/250 (1%)
Frame = +3
Query: 228 VXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQG--RXVIAQAQSGTGKTATFSI 401
V +F+ + LK LL G Y+ F+KPS +Q++A+ + R +I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 402 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI-RQL 578
++L ++D S+ + QA+ LAP+RELA+QI VV +G + K +++ + +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGA 227
Query: 579 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADV 755
+ +V+GTPG V D++ RR L A IK+FVLDEAD ML +G DQ + +L +
Sbjct: 228 KIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNT 287
Query: 756 QVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELXXWKLETLCXLY 935
Q++L SAT + V + + F + I ++ EEL++EGIKQ Y+ + K L LY
Sbjct: 288 QIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 347
Query: 936 DTLSIAQAVI 965
L+I Q++I
Sbjct: 348 GLLTIGQSII 357
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 151 bits (367), Expect = 2e-37
Identities = 94/256 (36%), Positives = 139/256 (54%), Gaps = 6/256 (2%)
Frame = +3
Query: 237 FDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQQ 416
F LK LL GFE PS VQQ I I G V+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 417 IDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI---RQLES 584
I+ E L+L TRELA QI+ +L + + GG N+++D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 585 GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQV 761
H+VV TPGR+ ++ + L N++K FVLDE D++L S + I +VF+ QV
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQV 232
Query: 762 ILLSATMPDDVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELXXWKLETLCXLYD 938
++ SAT+ +++ + + FM++P+ I V E +LTL G++Q Y+ +E K + L D
Sbjct: 233 MMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLD 291
Query: 939 TLSIAQAVISATPVAR 986
+L Q VI V+R
Sbjct: 292 SLEFNQVVIFVKSVSR 307
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 135 bits (327), Expect = 1e-32
Identities = 71/247 (28%), Positives = 128/247 (51%), Gaps = 2/247 (0%)
Frame = +3
Query: 216 GSQVVXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATF 395
G+ F +M L LL + GF+ P+ +Q++ I ++GR V+ A++G+GKTA F
Sbjct: 64 GNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAF 123
Query: 396 SISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 569
I +++ + +++ +ALIL+P RELA Q KVV + + A +GG ++ E
Sbjct: 124 VIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQF 183
Query: 570 RQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 749
L +VV TPGR + L ++I+ V DEAD + GF Q+ ++ L
Sbjct: 184 SLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPT 243
Query: 750 DVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELXXWKLETLCX 929
Q +L SAT+P +++ ++ ++DPV + + E ++ + +++ + LC
Sbjct: 244 SRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCI 303
Query: 930 LYDTLSI 950
L D + +
Sbjct: 304 LQDIIKL 310
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 132 bits (320), Expect = 8e-32
Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 4/224 (1%)
Frame = +3
Query: 234 TFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQ 413
+F +M L +L G GFE P+ +Q + I + G+ ++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 414 QI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLES 584
++ + + LIL PTRELA Q V + + CIGG +++ ++L
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 585 GVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQV 761
+V+ TPGR D M + I++ V+DEAD ML GF D+++++ + Q
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQT 439
Query: 762 ILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAI 893
+L SATM D V ++ R + PVR+ V ++ T + + Q ++ +
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRV 483
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 124 bits (300), Expect = 2e-29
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 1/219 (0%)
Frame = +3
Query: 234 TFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQ 413
TF + + L GF+ P+ +QQ AI + R VI AQ+G+GKTA F++ ++Q
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 414 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 593
++ + A++LAPTRELA QI + A+G + + +GG ++ L H
Sbjct: 107 ELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPH 166
Query: 594 VVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 770
V+V TPGR+ D + + +K ++DEAD +L F I + K++ + + +L
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLF 226
Query: 771 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYI 887
SATM V ++ R + PVR+ V + T++ + Q Y+
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYL 265
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 117 bits (282), Expect = 3e-27
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 6/229 (2%)
Frame = +3
Query: 228 VXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISI 407
V TF+ +L GFE P+ +QQ+A + GR ++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 408 LQQIDTSIRECQA-----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 572
+ I+ L+LAPTRELA QIQ+ G + GG IR
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Query: 573 QLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD 752
L GV + + TPGR+ DM+ + + VLDEAD ML GF+ QI + + D
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 300
Query: 753 VQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTL-EGIKQFYIAIE 896
Q ++ SAT P +V ++R ++ D +++ V +L IKQ ++
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVD 349
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 114 bits (274), Expect = 3e-26
Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 8/225 (3%)
Frame = +3
Query: 228 VXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISI 407
V ++ L A +S + G+EKP+++Q +AI GR VI A++G+GKT F + +
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476
Query: 408 LQQIDTS--IRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 572
+ I ++ + A+I+ PTRELA QI + LN + GG +++ I
Sbjct: 477 FRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA 536
Query: 573 QLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 743
L+ G +VV TPGR+ D+++ R + + VLDEAD M GF+ Q+ + +
Sbjct: 537 DLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
Query: 744 SADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 878
D Q +L SAT P + ++R ++ PV I V + ++Q
Sbjct: 597 RPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQ 641
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 113 bits (273), Expect = 4e-26
Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 6/196 (3%)
Frame = +3
Query: 234 TFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQ 413
+F + + L+ A +P+ +Q+ I ++GR I A++G+GKTA F++ I++
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 414 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVH 593
+ ALIL PTRELA QI + ALG +LN K +GG ++ L H
Sbjct: 68 KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPH 127
Query: 594 VVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADV 755
VVV TPGR+ D+I IK V+DEAD +LS F D + D F +L S D
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDR 187
Query: 756 QVILLSATMPDDVLEV 803
Q +L +AT+ D + ++
Sbjct: 188 QTLLFTATVTDAIRQL 203
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 112 bits (269), Expect = 1e-25
Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 22/245 (8%)
Frame = +3
Query: 228 VXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISI 407
V F + L + LL G+ +P+ VQ+ +I GR ++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 408 L--------------QQIDTSIRECQA----LILAPTRELAQQIQKVVIALGDHLNAKCH 533
L Q R +A LILAPTREL QI + +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPC 287
Query: 534 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 713
A GG ++R IRQ++ G ++ TPGR+ D+I R + IK VLDEAD ML GF+
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFE 347
Query: 714 DQIHDVFK---MLSADV-QVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQF 881
QI + + M S + Q ++ SAT P D+ ++R F++D V + V + T E I Q
Sbjct: 348 PQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQK 407
Query: 882 YIAIE 896
+ +E
Sbjct: 408 VVHVE 412
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 111 bits (268), Expect = 2e-25
Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 9/232 (3%)
Frame = +3
Query: 228 VXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATF---S 398
+ F + L + GFE + +Q+R+I P + GR V+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 399 ISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 575
I +L + R +I++PTRELA QI V L + + IGG N R + +
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADK 207
Query: 576 LESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-SA 749
L GV+++V TPGR+ D + + ++ V+DEAD +L GF+D++ + K+L S
Sbjct: 208 LVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSE 267
Query: 750 DVQVILLSATMPDDVLEVSRCFMR-DPVRILVQ--KEELTLEGIKQFYIAIE 896
+ Q +L SAT V +++R ++ P+ + V K T+EG++Q Y+ ++
Sbjct: 268 NRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVD 319
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 108 bits (259), Expect = 2e-24
Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 8/218 (3%)
Frame = +3
Query: 228 VXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISI 407
+ FD + + A L G +++P+ +Q + GR V+ A++G+GKT F I
Sbjct: 166 ILQFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPA 223
Query: 408 LQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQL 578
LQ ++ + + L+++PTRELA Q + + +L N K GG E R
Sbjct: 224 LQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAA 283
Query: 579 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-----ML 743
++ V++GTPGR+ D+I ++ + + VLDEAD ML GF+ I ++
Sbjct: 284 KNA-SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTR 342
Query: 744 SADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL 857
+ Q + SAT P+ V ++ F++DPV+I + +EL
Sbjct: 343 NGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDEL 380
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 107 bits (258), Expect = 2e-24
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 8/215 (3%)
Frame = +3
Query: 234 TFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQ 413
TF L L + FEKP++VQ I ++G+ ++AQA++G+GKTA + I IL+
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 414 ------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 575
QID + R AL+L PTRELAQQ+ V+ L + TN + +++
Sbjct: 75 LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQR 134
Query: 576 --LESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA 749
L +V+ TP R + L + +K V+DEAD MLS G+ + + + + L
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPR 194
Query: 750 DVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEE 854
Q L+SAT+ ++ + + R+P + V+ +E
Sbjct: 195 GTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKE 229
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 107 bits (258), Expect = 2e-24
Identities = 71/236 (30%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Frame = +3
Query: 252 LKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQQIDT-- 425
L + +L +++PS++Q+ AI +Q + +I A++G+GKTA F I ++ I
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 426 SIRECQ------ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 587
+ E A++LAPTRELAQQIQ + L +C + +GG E Q+ G
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375
Query: 588 VHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-------- 743
H+VV TPGR+ D + RR + V+DEAD ML GF+D ++ + L
Sbjct: 376 AHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEK 435
Query: 744 -----------SADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 878
S+ Q I+ SAT+P V +++ ++ +PV + + ++ ++Q
Sbjct: 436 DGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQ 491
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 103 bits (248), Expect = 4e-23
Identities = 68/242 (28%), Positives = 126/242 (52%), Gaps = 7/242 (2%)
Frame = +3
Query: 219 SQVVXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFS 398
S+ V F + L S F + +Q++ I ++GR ++ A++G+GKT F
Sbjct: 35 SETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFI 94
Query: 399 ISILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 566
+ +++ + TS+ AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 95 VPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEE 154
Query: 567 IRQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKML 743
+L S ++++V TPGR+ I + + +++ +LDEAD +L GF+ + + L
Sbjct: 155 KERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSL 213
Query: 744 SADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL--TLEGIKQFYIAIELXXWKLE 917
Q +L SAT V +++R +++P I V + + T + QFY+ + L KL+
Sbjct: 214 PVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTE-KLD 272
Query: 918 TL 923
L
Sbjct: 273 IL 274
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 95.9 bits (228), Expect = 1e-20
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Frame = +3
Query: 252 LKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQQI--DT 425
L +L GF KP +Q I G +I +A +G+GKT F I IL+ +
Sbjct: 129 LSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNV 188
Query: 426 SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 605
+ QAL++APTRELA QI + + N + + GG V++ R L HVVV
Sbjct: 189 DAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVA 248
Query: 606 TPGRVYDMITRRALHAN--TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVIL 767
TPGR++ +I L N IK VLDEAD +L + +++ + ++L + Q +
Sbjct: 249 TPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFI 308
Query: 768 LSATMPD 788
SAT +
Sbjct: 309 FSATFDE 315
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 86.2 bits (204), Expect = 9e-18
Identities = 70/262 (26%), Positives = 125/262 (47%), Gaps = 18/262 (6%)
Frame = +3
Query: 234 TFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQ 413
+F ++ + L + A GF+K + VQ AI ++ + ++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 414 QI---DTSIRECQALILAPTRELAQQIQKVVIAL----------GDHLNAKCHACIGGTN 554
++ DT ALI+APTRELA QI V L G L A + GT
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTL 121
Query: 555 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVF 734
+ E VV+GTPGR+ +M++ + + +++ +LDEAD ++ GF+ + +
Sbjct: 122 TNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSII 179
Query: 735 KMLSADVQVILLSATMPDDVLEVSR-CFMRDPVRILVQKEELTLEGIKQFYIAIEL---- 899
L + L SATM D V + +R+ VR+ V ++ +AI+
Sbjct: 180 SQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIP 239
Query: 900 XXWKLETLCXLYDTLSIAQAVI 965
+K++ + L T+ +A++
Sbjct: 240 PIYKVQCMIHLLCTIEYEKAIV 261
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 85.8 bits (203), Expect = 1e-17
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%)
Frame = +3
Query: 303 SAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQQIDTSIRE-CQALILAPTRELAQ 479
+ +Q+ AI R ++A A +G+GKT + ILQ++ + +A+I+APTREL +
Sbjct: 70 TTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE 129
Query: 480 QIQKVVIALGDHLNAKC-HACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHAN 656
QI + L + K ++E +L + +GTP R+ I + L
Sbjct: 130 QIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI-QTGLSFE 188
Query: 657 TIKLFVLDEADEMLSRGFKDQI-HDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVR 833
++ FV+DEAD + GF +Q H + S+++ L SAT+P V E+++ DP+R
Sbjct: 189 KVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIR 248
Query: 834 ILVQKEELTLEGIKQ 878
I+V ++ + I Q
Sbjct: 249 IIVGLKDAATDSIDQ 263
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 85.0 bits (201), Expect = 2e-17
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 12/245 (4%)
Frame = +3
Query: 288 GFEKPSAVQQRAIMPCIQGRX-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 449
GFEK + VQQR + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 450 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN-VREDIRQLESGVHVVVGTPGRVYD 626
IL+PTRELA QI + L + IGG + +RE+ ++++ TPGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
Query: 627 MITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-MLSADVQVILLSATMPDDVLE 800
+ R L + + F+LDEAD ++ GF + I ++ + + + + + SATMP V
Sbjct: 177 HLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSN 236
Query: 801 VSRCFMRDPVRI---LVQKEELTLEGIKQFYIAIELXXWKLETLCXLYDTLSIAQAVISA 971
V R + ++ L E T E + QF I +L +LS+ Q + S+
Sbjct: 237 VFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDK-------VFSSSLSLLQQLTSS 289
Query: 972 TPVAR 986
P +R
Sbjct: 290 NPSSR 294
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 83.4 bits (197), Expect = 6e-17
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 15/195 (7%)
Frame = +3
Query: 300 PSAVQQRAIMPCIQ--GRXVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 452
P+A+Q + + + +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 453 LAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 620
+APTREL QQI V L + H C+ IGG + + ++ GV++++GTPGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRL 280
Query: 621 YDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD-DV 794
D + AL + ++ VLDE D ++ GF++ + + L + +I ++P V
Sbjct: 281 ADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKV 340
Query: 795 LEVSRCFMRDPVRIL 839
+ M+D V+ L
Sbjct: 341 TMLCSATMKDTVKRL 355
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.9 bits (146), Expect = 9e-11
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Frame = +3
Query: 342 GRXVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 518
G V A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 519 NAKCHACIGGTNVREDIRQL-----ESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLD 680
+ A G ++R + QL E + V+V TPGR+ D I + ++ V+D
Sbjct: 233 GLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVID 292
Query: 681 EADEMLSRGFKDQIHDVFKMLS 746
EAD +L + F+D + V +S
Sbjct: 293 EADRLLDQSFQDWVDTVMMEIS 314
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 39.9 bits (89), Expect = 7e-04
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Frame = +3
Query: 252 LKAALLSGXY-AXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSISILQQIDTS 428
L L++ Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 429 IRECQALILAPTRELAQQIQKVVIALGDHL----NAKCHACIGGTNVREDIRQLESGVHV 596
+ A + PT+ LAQ +K +I + ++ N + G T + E + ++
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPL-ESRESIIRSANI 412
Query: 597 VVGTPGRVYDMITRRA----LHANTIKLFVLDEA 686
+ P ++ I A +KLFVLDEA
Sbjct: 413 IFTNPDMLHQTILPNANRWYYFFKNLKLFVLDEA 446
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 33.9 bits (74), Expect = 0.049
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Frame = +3
Query: 351 VIAQAQSGTGKTATFSISILQQIDTSIRE--------CQALILAPTRELAQQIQKVVIAL 506
++ A +G GKT + IL ++ +RE + + +AP + L Q++
Sbjct: 538 ILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKR 597
Query: 507 GDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA---LHANTIKLFVL 677
N + G + + +Q S ++V TP + +D+ITR+A + N ++L ++
Sbjct: 598 LTPYNIRVAELTGDSQL---TKQQISETQIIVTTPEK-WDIITRKANDLSYVNLVRLVII 653
Query: 678 DEADEML-SRG--FKDQIHDVFKMLS---ADVQVILLSATMPD 788
DE + RG + + +F+ V+++ LSAT+P+
Sbjct: 654 DEVHLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPN 696
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 528 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 695
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 1.9
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = +3
Query: 417 IDTSIRECQALILAPTR-ELAQQIQKVVIALGDHLNAK-CHACIGGTNVREDIRQLESGV 590
+D IR+ A+ +P +LA + + D H +++ D+R +ESGV
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGV 404
Query: 591 HVVVGTPGRVYDMITR--RALHANTIKLFVLDEADEMLSRGFKDQ 719
+ + T G YD + L+ + IK V E M G+ D+
Sbjct: 405 NRFIATSG--YDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGYGDR 447
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 2.4
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Frame = -1
Query: 1018 TQMHRFSEPIHLATGVAEITACAIDSVSYXSHRVSSFHXXNSIAM*NCLIPSRVSSSFCT 839
T FS +T + +++ ++ S S S SS S ++ IPS SSS T
Sbjct: 192 TSSSTFSSAAPTSTSSSYLSSSSVVSSS-SSPSSSSSSTLTSSSLSTSSIPSTSSSSSST 250
Query: 838 --SMRTGSLIKHRDTSNTSSGMV---AESNMT*TSADNILKTSWIWSLKPLDNISSASSR 674
S+ + S +S++SS ++ + S+ + TS + + +S S P S+ SS
Sbjct: 251 SSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSS 310
Query: 673 TKS 665
+ S
Sbjct: 311 SSS 313
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 372 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 488
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 404 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 505
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +3
Query: 765 LLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELXXWKLETLCXLYDTL 944
L+S T+ D + V F+ D V L + ++ +EG ++I++ + C LY TL
Sbjct: 1024 LISLTLKDSDVCVIYNFVDDLVIFLKKCDKTLIEGFVLPILSIKIEKSLYKGFCYLYLTL 1083
Query: 945 SIAQAVIS 968
+ ++ S
Sbjct: 1084 KVFLSISS 1091
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 483 IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT-PGRVYDMITRRALHANT 659
++ + A+ DHL+ + CIG N+ ED VH + T G+ ++T H++
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED------SVHKISLTRSGKPSQLVTVSCRHSSV 187
Query: 660 IK 665
I+
Sbjct: 188 IQ 189
>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 7.5
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = -3
Query: 809 SRYFQYI-IRHGSRE*YDLNIS*QHLEDIMDLVLETSGQHFISFIKNKKFDGVGMKRTTS 633
SRY + I+ + Y +S L++I+ L+ +G F+ FI N + + +T
Sbjct: 64 SRYLEEASIKRIEKSQYFSGLSEGALDNIVQLITLRAG--FVEFI-NALVPDLRVSKTI- 119
Query: 632 YHIIYTTWSAHHHMNTTLQLANIFTDIGATNAS 534
+H++ WSA T L ++ D+ +A+
Sbjct: 120 FHVLSVNWSARVIEQTLLHHTDLTADLLCVHAN 152
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 687 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 797
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 518 QVITKSYHHLLNLLGQLSCGSQDQ 447
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,923,106
Number of Sequences: 5004
Number of extensions: 77429
Number of successful extensions: 276
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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