Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K08.2
         (1297 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      119   5e-29
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    25   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   7.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   7.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  119 bits (287), Expect = 5e-29
 Identities = 70/215 (32%), Positives = 120/215 (55%), Gaps = 14/215 (6%)
 Frame = +3

Query: 222 QVVXTFDAMXLKAALLSGXYAXGFEKPSAVQQRAIMPCIQGRXVIAQAQSGTGKTATFSI 401
           Q + +F+A  L+  +L      G++KP+ VQ+ A+   + GR ++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252

Query: 402 SIL-----QQIDTSIR----ECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 554
            I+     + +D  +     E Q +I++PTREL  QI + ++    +   K     GGT+
Sbjct: 253 PIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTS 312

Query: 555 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI---- 722
           V     +L +G H++V TPGR+ D + +  +  ++++  VLDEAD ML  GF   I    
Sbjct: 313 VMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMV 372

Query: 723 -HDVFKMLSADVQVILLSATMPDDVLEVSRCFMRD 824
            H+    L  + Q ++ SAT PD+V  ++R F+ +
Sbjct: 373 DHETMVPL-GERQTLMFSATFPDEVQHLARRFLNN 406


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 986 PCDGCCRNYSLCNRQCIIQXTQSF 915
           PCDGC   Y   N   + Q T  F
Sbjct: 19  PCDGCAAPYGYKNIMTLSQDTSHF 42


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 367 SQELEKLLLSLYRFYNKSIQAFVNV 441
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = -2

Query: 642  HDELSYHIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQELSPPSEFVGPALL 463
            ++EL++   +  CPPP    S  G    G     C +   H    +E   PS+ +     
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLGFREEMDPSKAMQFQTF 1748

Query: 462  WEPGS 448
              PG+
Sbjct: 1749 PHPGN 1753


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 558 GHWCHQCKHGI*HSS 514
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -2

Query: 648 EAHDELSYHIHDLECPPPHEHHSP 577
           + H  L  H H L+     +HH P
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRP 162


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
            protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 1012 MHRFSEPIHLATGVAEITACAID 944
            +HR +EP+ L     E   CA+D
Sbjct: 165  LHRANEPVVLDDSKEEHPTCALD 187


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 713 LETSGQHFISFIKNKKFDGVGMKRTTSYHIIY-TTWSA 603
           L+    H I+ I +K F GVG+    S+  I+   W++
Sbjct: 120 LQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWAS 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,410
Number of Sequences: 438
Number of extensions: 5554
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44543373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)