Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K06.2
         (1296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...   130   5e-31
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    28   3.2  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   3.2  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   4.3  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score =  130 bits (313), Expect = 5e-31
 Identities = 61/143 (42%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
 Frame = +1

Query: 511 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRW 690
           HP  +FF L+FR  AI+ YIL  +F+ SF+  F+++  LL+ D WTVKN+SGRLLVGLRW
Sbjct: 47  HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106

Query: 691 WNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLL 864
            N    +G+S W+FE+      RN  + + FW  L L P +W    I  +   +F W+ L
Sbjct: 107 RNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLWLAL 166

Query: 865 VLIAXTLTGANLYGYIKCKFGAK 933
           V +A  LT  N   Y +C   AK
Sbjct: 167 VAVAIGLTSVNTAAYSRCDKDAK 189


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +2

Query: 269 VQAYLLFLYNSIC-LTAVKIIHQ-YLSTXSDTHLKLICEINSIDY**TIQL*IRQRQLCH 442
           ++ Y L L +SI   +A ++I   Y++  +DT  +L    N +     + L      + H
Sbjct: 534 LKLYFLELPDSIVPSSAFELIRSIYMNHSNDTPYRLRLLQNLLSQLRRVNLATLSAIITH 593

Query: 443 RSRCLMMTPSHLVKRIMLINSLSIHT*CSSTW 538
            +R + +TP+     I L NSLS+     +TW
Sbjct: 594 LNRLITLTPNKETFTINLANSLSLCISRPATW 625


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 505 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGL 684
           FV+P +  F L   CS ++ ++L G F   F+A   + I  L    +   N S R     
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRLELQDFLDSNSSNR---NS 411

Query: 685 RWW 693
           +WW
Sbjct: 412 KWW 414


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +1

Query: 517 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNIS 663
           Y+  F LV   +A++V    G     W S   I   V  +L+L A +W  KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,822,354
Number of Sequences: 5004
Number of extensions: 70978
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)