Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_K04.2
(1487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.044
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.71
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.94
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 1.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 5.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 8.8
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 8.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.044
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 1089 GGPPPXXKKKKXXGGGXPPXPPXPP 1015
GGPPP G G PP PP PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 1313 GGXXXXXTPPXXGGXXPPPPXPSP 1242
GG PP G PPPP P P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Frame = -2
Query: 1381 PPP--IKXXXXSXPLPLPPPXXXRGGGXXXXXPPHXXG 1274
PPP I P+P+PPP GG PP G
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 1083 PPPXXKKKKXXGGGXPPXPPXPPPXXXPPXPP 988
P P GG PP PP PP PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 1047 GGXPPXPPXPPPXXXPPXPPGXKXP 973
GG PP PP P P PP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.71
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +2
Query: 968 PRGFXX-PGGXGGXFXG--GGXGGXGGXP 1045
P GF PGG GG G GG GG GG P
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +2
Query: 977 FXXPGGXGGXFXGGGXGGXGGXPPPXXFFFFXXGG 1081
F G GG F GG GG G PPP F GG
Sbjct: 180 FHHRGHNGGGF--GGFGGGSGGPPPGPGGFGGFGG 212
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = +2
Query: 968 PRGFXX-PGGXGGX--FXGGGXGGXGGXP 1045
P GF PGG GG GGG GG GG P
Sbjct: 230 PGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.94
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 1044 GXPPXPPXPPPXXXPPXPPGXKXPRG 967
G PP PP PPP PP P P G
Sbjct: 7 GNPPPPP-PPPGFEPPSQPPPPPPPG 31
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect(2) = 1.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 1035 PXPPXPPPXXXPP 997
P PP PPP PP
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 23.0 bits (47), Expect(2) = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 1038 PPXPPXPPP 1012
PP PP PPP
Sbjct: 189 PPPPPPPPP 197
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 1047 GGXPPXPPXPPP 1012
GG PP PP PPP
Sbjct: 303 GGLPPPPPPPPP 314
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Frame = -3
Query: 1038 PPXPPX--PPPXXXPPXPPG 985
PP PP PPP PP P G
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAG 1726
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 962 PPPRGFXXPGGXGGXFXGGGXGG 1030
PPP PG G F G G GG
Sbjct: 77 PPPGAEGGPGAGFGGFPGAGPGG 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,815
Number of Sequences: 5004
Number of extensions: 19572
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 830530906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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