Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K03.2
         (1355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    30   0.64 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   2.6  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 553 RGDEVCXAXCKVEIMRWVEGDDPAADHRRWAPQCPF 660
           R D V    C      W + DDP  +H   +P CP+
Sbjct: 62  RLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPW 97



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 580 CKVEIMRWVEGDDPAADHRRWAPQCPF 660
           C + +  W   DDP  +H+R    C F
Sbjct: 166 CDINLHDWEPDDDPYTEHKRRRADCVF 192


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -2

Query: 655 DTGAPISDDRQQDRRLRPTS*FLPYXKXSTPRRPDRXSXIPCGPIVPAS*TXRXXDQ 485
           +T +PI ++++ +  L PTS    Y   STP RP      P  PI  +S T R  D+
Sbjct: 385 ETNSPIIENKEANNFLAPTSNVPAY---STPARPTESPPPP--PISSSSTTPRPDDK 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,282
Number of Sequences: 5004
Number of extensions: 36903
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 747178928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)