Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K03.2
         (1355 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77654-2|CAB01130.1|  308|Caenorhabditis elegans Hypothetical pr...    30   3.3  
U72208-1|AAD00182.1|  308|Caenorhabditis elegans inhibitor of ap...    30   3.3  

>Z77654-2|CAB01130.1|  308|Caenorhabditis elegans Hypothetical
           protein C50B8.2 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 484 FDQXXVTFXTPEQLXRKGXYXLGRGDEVCXAXCKVEIMR--WVEGDDPAADHRRWAPQCP 657
           FD+      T ++L + G + +    +   A C   ++   + E DDP  +H++++  C 
Sbjct: 179 FDKKRNVKCTSKKLAKAGWFSIANKKDKTSAKCPFCLVELDFDESDDPWEEHQKFSASCD 238

Query: 658 FVR 666
           F++
Sbjct: 239 FIK 241



 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 484 FDQXXVTFXTPEQLXRKGXYXLGRGDEVCXAXCKVEIMR--WVEGDDPAADHRRWAPQCP 657
           +D+      T E+L R G Y     +    A C   ++   + + DDP   H+  +P C 
Sbjct: 36  YDKRINIACTSEKLARAGFYSTASPEFPASAKCPFCMLEINFEQCDDPWEKHKSGSPHCE 95

Query: 658 FV 663
           FV
Sbjct: 96  FV 97


>U72208-1|AAD00182.1|  308|Caenorhabditis elegans inhibitor of
           apoptosis homolog protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 484 FDQXXVTFXTPEQLXRKGXYXLGRGDEVCXAXCKVEIMR--WVEGDDPAADHRRWAPQCP 657
           FD+      T ++L + G + +    +   A C   ++   + E DDP  +H++++  C 
Sbjct: 179 FDKKRNVKCTSKKLAKAGWFSIANKKDKTSAKCPFCLVELDFDESDDPWEEHQKFSASCD 238

Query: 658 FVR 666
           F++
Sbjct: 239 FIK 241



 Score = 29.1 bits (62), Expect = 7.6
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 484 FDQXXVTFXTPEQLXRKGXYXLGRGDEVCXAXCKVEIMR--WVEGDDPAADHRRWAPQCP 657
           +D+      T E+L R G Y     +    A C   ++   + + DDP   H+  +P C 
Sbjct: 36  YDKRINIACTSEKLARAGFYSTASPEFPASAKCPFCMLEINFEQCDDPWEKHKSGSPHCE 95

Query: 658 FV 663
           FV
Sbjct: 96  FV 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,684,514
Number of Sequences: 27780
Number of extensions: 224446
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3819250826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)