Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_K02.2
         (1281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   257   2e-69
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   256   6e-69
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    55   2e-08
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   1.4  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   7.4  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  257 bits (630), Expect = 2e-69
 Identities = 120/158 (75%), Positives = 138/158 (87%)
 Frame = +2

Query: 176 LTKSLKLIGAXGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRI 355
           L   LKL G  GLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA++RRLVR+
Sbjct: 24  LDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRL 83

Query: 356 GVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 535
           G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+
Sbjct: 84  GILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNV 143

Query: 536 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 649
           PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR  Q
Sbjct: 144 PSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  256 bits (626), Expect = 6e-69
 Identities = 119/155 (76%), Positives = 137/155 (88%)
 Frame = +2

Query: 176 LTKSLKLIGAXGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRI 355
           L   LKL G  GLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA++RRLVR+
Sbjct: 24  LDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRL 83

Query: 356 GVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 535
           G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+
Sbjct: 84  GILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNV 143

Query: 536 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 640
           PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 144 PSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
 Frame = +2

Query: 218 NKREVWRVKYTL--ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDY 391
           +KRE ++ KY +   + R+ A  L  L+  DP RL   N LL +L  +G+L  K    D 
Sbjct: 39  SKREEYQ-KYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDI 97

Query: 392 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 550
                +     RRL   + K  +++ +  A  LI Q H+RV   V+  P+++V
Sbjct: 98  ENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +1

Query: 406  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 537
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 377 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 508
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,419
Number of Sequences: 5004
Number of extensions: 48361
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)