Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_K01.2
(1313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 42 2e-04
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 0.005
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 32 0.15
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.35
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 30 0.82
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.82
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 30 0.82
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 29 1.4
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 29 1.4
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 2.5
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 4.3
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 27 5.7
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce... 27 7.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 7.6
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 688 EDSQINRLRDEHFRKRSWSLEECSICFEIMLKDQELMALPCTHNFTRSASCPGFRE-KQX 864
++ ++ L DE R+ ++ +E C IC E K +++ALPC H F R + +
Sbjct: 300 QNGELVPLMDESTRRATFGVE-CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHA 358
Query: 865 CPNCRKD 885
CP C +
Sbjct: 359 CPTCNTE 365
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 37.1 bits (82), Expect = 0.005
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 751 ECSICFEIMLKDQELMALPCTHNFTRSASCPGFREKQXCPNCR 879
EC+IC E+ + +++ LPC H F + P R C CR
Sbjct: 395 ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 754 CSICFEIMLKDQELMA--LPCTHNFTRSASCPGFREKQXCPNCRKD 885
C IC++ M ++ E A +PC H F ++ CP CRK+
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKE 152
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 751 ECSICFEIMLKDQELMALPCTHNFTRSASCPGFREKQXCPNCR 879
EC ICF ML D + PC H F + CP CR
Sbjct: 168 ECQICFG-MLYDP--VVSPCGHTFCGPCLMQALTQSPQCPTCR 207
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 29.9 bits (64), Expect = 0.82
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +1
Query: 751 ECSICFEIMLKDQELMALPCTHNFTRSASCPGFREKQ---XCPNCRK 882
EC IC +L Q L PC+H++ P E C CRK
Sbjct: 191 ECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHPYFSCFICRK 237
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.9 bits (64), Expect = 0.82
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 718 EHFRKRSWSLEECSICFEIMLKDQELMALPCTHNFTRSASCPGFREKQXCPNCRKDAWIE 897
E F+K +LE C IC E + Q C H + +E + CP CR+ + +
Sbjct: 74 ETFQKIKKTLE-CPICTEAL---QRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQ 129
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 29.9 bits (64), Expect = 0.82
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 250 TSIIEDSMPDTSISSXRAESTNSVSSDXDMSNTEDTHS-PSNNDT 381
TS ++S P S SS +ES++SVS D+S+T D+ S ++DT
Sbjct: 254 TSQSKNSTPSESDSSS-SESSSSVSDSSDLSSTSDSSSGDESSDT 297
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 487 VTHLSR*FQKWTY-QYRTLCRHQILQRHLNRSNLNLWCHCSKVNVYLQC 344
+ H + F KW Y Q+ + R L + +RSN N+ +CS+ +Y C
Sbjct: 174 IIHCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNM--YCSEHLIYALC 220
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 754 CSICFEIMLKDQELMALPCTHNF-TRSASCPGFREKQXCPNCRKD 885
C IC+ D L LPC H F T+ K CP C +D
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +1
Query: 745 LEECSICFEIMLKDQEL---MALPCTHNFTRSASCPGFR--EKQXCPNCR 879
+EEC+IC+ ++ ++ L C H F S F+ CP CR
Sbjct: 1555 VEECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = +1
Query: 601 IDVPFEERRSPLMMFFSGLTHMISPRRKAEDSQINRLRDEHFRKRSWSLEECSICFEIML 780
I + F +R + +GL + R+K ED +++ + +++ + + C++C E+
Sbjct: 376 ISLSFSKRTTKRQFPETGLGRQGAIRQKKEDVVASQVGHQFVQRQFYQIMRCAVCAELFS 435
Query: 781 KDQELMALPCT 813
L C+
Sbjct: 436 YSPGLQCENCS 446
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 559 QNPLFPRRFETTDTLSRGSHSGSHVTH 479
+NP P +T DTL S S + TH
Sbjct: 141 ENPTIPNSEQTVDTLDAASSSAPNFTH 167
>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +1
Query: 745 LEECSICFEIML---KDQELMALPCTHNFTRSASC 840
LE+ I + I L KD+ LPCTH T + C
Sbjct: 108 LEKLGIRYRIALRIAKDERFERLPCTHKGTYADDC 142
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 208 SDXYXTIXXHSTXDTSIIEDSMPDTSISSXRAESTNSVSSDXDMSNTEDTHS 363
SD T S+ TSII DTS+SS T ++S SN+++ ++
Sbjct: 154 SDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHT-PIASPTTSSNSDNEYT 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,458,117
Number of Sequences: 5004
Number of extensions: 60507
Number of successful extensions: 193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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