Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J23.2
         (1352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    70   6e-13
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    62   1e-10
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    57   6e-09
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    54   5e-08
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    40   6e-04
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc...    28   2.6  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 407

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
 Frame = +2

Query: 632  RGADIVMELTVSLEELYNGNFIEITRNKPVIKPAPGTR-----------KCN-CRQEMVT 775
            +G D+V  + V+LE+LY G   ++   K VI P    R            CN    + +T
Sbjct: 106  KGKDLVHTIKVTLEDLYRGKTTKLALQKKVICPKCSGRGGKEGSVKSCASCNGSGVKFIT 165

Query: 776  RNLGPGRFQMMQQTV---------------CDECPNVKFVNEERLLEIEVEVGAPDGHKS 910
            R +GP   Q MQ T                C EC   K +++ ++L + VE G  +G K 
Sbjct: 166  RAMGP-MIQRMQMTCPDCNGAGETIRDEDRCKECDGAKVISQRKILTVHVEKGMHNGQKI 224

Query: 911  RLRGEGEPHVDGEPGDLIVILKTERHPQFTRKADDLYTNVTISLQDALXG 1060
              + EGE      PGD+I ++  + HP+F R  D L+    + L  AL G
Sbjct: 225  VFKEEGEQAPGIIPGDVIFVIDQKEHPRFKRSGDHLFYEAHVDLLTALAG 274


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 379

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 31/73 (42%), Positives = 44/73 (60%)
 Frame = +2

Query: 848  VNEERLLEIEVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQFTRKADDLYTN 1027
            V  +R+LEI+V+ G   G K +  GEG+   DG   D+  +L  + HP FTR  DDL   
Sbjct: 240  VKADRILEIKVKPGWKAGTKIKFAGEGDEKPDGTVQDIQFVLAEKPHPVFTRSGDDLRMQ 299

Query: 1028 VTISLQDALXGFN 1066
            V +SL++AL GF+
Sbjct: 300  VELSLKEALLGFS 312


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 413

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 29/174 (16%)
 Frame = +2

Query: 632  RGADIVMELTVSLEELYNGNFIEI--TRNK--PVIKPAPGTR-----KC-NCRQEMVTRN 781
            RG+D++ +  +SLE+++ G  +++  TRN   P  +   G R      C +C  + V ++
Sbjct: 116  RGSDVIHDYEISLEDMFKGKEVKLRATRNTLCPRCQGRGGKRFAKEKPCLSCDGKGVKQH 175

Query: 782  L---GPGRFQMMQQTVCDEC--PNVKF--------------VNEERLLEIEVEVGAPDGH 904
            L   GP       Q +CD C    V F              V E+R+L   V   A +  
Sbjct: 176  LKHVGPHHVTN-SQVICDTCNGKGVSFRGKDRCKHCKGSGTVPEQRMLSFFVNRSAKEND 234

Query: 905  KSRLRGEGEPHVDGEPGDLIVILKTERHPQFTRKADDLYTNVTISLQDALXGFN 1066
            K   RG  +      PGD+I+ L  + HP F R  DDL   + ISL +AL GFN
Sbjct: 235  KIIQRGMADEAYGITPGDVILQLHQKPHPVFERLGDDLKAKLKISLAEALTGFN 288


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 381

 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = +2

Query: 821  CDECPNVKFVNEERLLEIEVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQ-F 997
            C  C   +        +I+V  GAP+G++   RG+ +     E GD+IVIL+       +
Sbjct: 213  CPRCKGERVAEVVESFDIKVPAGAPEGYRIGFRGKADEIPGMEAGDIIVILEAAGGDYGW 272

Query: 998  TRKADDLYTNVTISLQDALXG 1060
            TRK +DLY   TIS+++AL G
Sbjct: 273  TRKDNDLYRKETISVREALLG 293


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 528

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
 Frame = +2

Query: 815  TVCDECPNVKFVNEERLLEIEVEVGAPDGHKSRLRGEGE--------PHVDGEPGDLIVI 970
            + C  C     V E + + I++  G  D    R+ G G         P+    PGDL   
Sbjct: 294  SACRSCMGSGTVRERKTVSIDIPPGIDDNTVLRVMGAGNDASTAKGGPNAKSRPGDLFAT 353

Query: 971  LKTERHPQFTRKADDLYTNVTISLQDALXG 1060
            +   +HP F R+  ++  N  I +  A  G
Sbjct: 354  IHVRKHPFFVREGTNVTYNAKIPMTTAALG 383


>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
           Rec25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 623 RDVAVHHQNGIQNHQRSLQKGXLLXIIPALLQ 528
           +D  V  +N  QNHQ   Q+G ++ I   LLQ
Sbjct: 46  KDNVVEEKNTDQNHQNQNQEGVIIEIYQELLQ 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,629,204
Number of Sequences: 5004
Number of extensions: 60553
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 745191750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)