Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J17.2
         (1275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    31   0.34 
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    27   7.3  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    27   7.3  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -2

Query: 653 LSSVTVLSLKNLTKIFL*SNKVGKYYLDQFSVYKNAN*VAMFTLELPLYFHCHLRIRLQD 474
           ++S+  L  K++  +    NKV      QFSV KN   + MF   LP Y+H H+ I   D
Sbjct: 194 IASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQ--LKMFVHYLPSYYHLHVHILHVD 251

Query: 473 RQ 468
            +
Sbjct: 252 HE 253


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 807 GHNLREFADTSPSKSSASLNLPPDRYCDPGMRRSDEKSSGL 929
           G NLR  A  S  +   S + PP R  D    RS  +SS +
Sbjct: 491 GDNLRREASLSSEQDDLSEDFPPVRESDEQESRSGGRSSAM 531


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 318 LHNIDRINTE--VHGVIMNIPIPFPLPE 395
           LH + ++N +  VHGV++ +P+P  L E
Sbjct: 111 LHELKKLNDDHTVHGVLVQLPLPKHLNE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,192,161
Number of Sequences: 5004
Number of extensions: 81619
Number of successful extensions: 235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)