Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J17.2
         (1275 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1608 - 38612754-38616947,38617030-38617095                       32   1.1  
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    31   1.5  
04_04_0946 - 29579779-29580004,29580098-29580210                       30   3.4  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    30   4.5  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    29   7.8  

>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 795  WRAHGHNLREFADTSPSKSSASLNLPPDRYCD 890
            W AHG     F D +   S  + NL P RYCD
Sbjct: 1313 WSAHGEGRAFFPDENVLASVVNSNLAPVRYCD 1344


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 795  WRAHGHNLREFADTSPSKSSASLNLPPDRYCD 890
            W AHG     F D +   S    NL P RYCD
Sbjct: 1309 WSAHGEGRAFFPDENVLASVVKSNLAPVRYCD 1340


>04_04_0946 - 29579779-29580004,29580098-29580210
          Length = 112

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 281 KHRRHNRPAVYTIA---QHRSHKYRSSRGHHEHPDTVP 385
           KHRR  R A + ++   +HR+H +   R HH+ P   P
Sbjct: 59  KHRRKKRAAAHAVSVRKEHRNH-HHHHRHHHQQPQPRP 95


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 267 CILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPFPLP 392
           C+   N D  +   F P  ++D IN    GV++ +  P+P P
Sbjct: 448 CVAFTNVDTKLISVFRPFRDLDIINQGSEGVVVKLLQPWPPP 489


>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
 Frame = +2

Query: 212  TSDSPQRDGERMRRVVQSLYTE-----EKHRRHNRPAVYTIAQHRSHKYRSSRGHHEHPD 376
            TSDS      R R + +S         EK R   RP  +    HR H +R    HH+H  
Sbjct: 1274 TSDSNNHKHRRSRSLEESSDDAAAGEYEKVRNGKRP--HKTGHHRHH-HRHHHHHHDHRS 1330

Query: 377  TVPPAGV*RVQGQRA 421
            +  P    R  GQ+A
Sbjct: 1331 SSEPNDKKRQDGQKA 1345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,318,493
Number of Sequences: 37544
Number of extensions: 549671
Number of successful extensions: 1398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3957481680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)