Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J17.2
         (1275 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    33   0.57 
Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    30   3.1  
U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeas...    29   9.3  
U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeas...    29   9.3  
U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeas...    29   9.3  

>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 225 HNVTVSGCEESSSHCILKRNTDA--TIGLQF 311
           HN T+SGCE +SS   LK + D+  T G++F
Sbjct: 625 HNSTISGCESNSSVATLKMSIDSNCTTGIEF 655


>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 204 GSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINTEVHGVIMNIPIPF 383
           G+  +T H    S    S+ H I++R     I  Q   + N+D++  E  GV++ IP   
Sbjct: 93  GTNQSTHHTTRAS---LSTEHRIIERCDYMLIIAQTNSIDNMDKLEIEAEGVLVEIPYKK 149

Query: 384 PL 389
           P+
Sbjct: 150 PI 151


>U40409-3|ABO16455.1|  681|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform b
           protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 180 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 344
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 168 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 219


>U40409-2|AAA81388.3|  759|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform a
           protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 180 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 344
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 168 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 219


>U40409-1|ABO16456.1|  807|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 41, isoform c
           protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 180 EAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTPLHNIDRINT 344
           E + F DC S ++TV  +T     ESS+  ILK +    +GL+   L + D I +
Sbjct: 216 EGEDFDDCASVISTVTTLTAL---ESSACTILKTSVIRPLGLKEFELQSEDMIES 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,301,503
Number of Sequences: 27780
Number of extensions: 467361
Number of successful extensions: 1275
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)