Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J12.2
         (1291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...   200   4e-52
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...   195   1e-50
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    29   1.1  
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    28   3.2  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   5.6  

>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score =  200 bits (487), Expect = 4e-52
 Identities = 109/260 (41%), Positives = 147/260 (56%), Gaps = 9/260 (3%)
 Frame = +3

Query: 189 VGSGXWGAALAQXVGRNA-ARLSNFXARVTMWVSAAIIEGK----QLTEXINXTHXNVKY 353
           VGSG WG A+A+  G NA A   +F ++V MWV    IE K    +LTE  N  H NVKY
Sbjct: 28  VGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVFNEAHENVKY 87

Query: 354 LPGHKLPSNXXXXXXXXXXXXXXDLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFD 533
           LPG + P N              D+L+FVVPHQF+  +C  ++G I+P A  +S IKG  
Sbjct: 88  LPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGAVGISCIKGVA 147

Query: 534 IAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRD--- 704
           +++  G+ L S +I+  L I C VL GAN+A+EVA E+FCETTIG        + R+   
Sbjct: 148 VSK-EGVRLYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIGFNPPNEVDIPREQIA 206

Query: 705 -IIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAVIRLGLMEMIKF 881
            +    YF            + GALKN+VA+  GF DGL +G NTKAA++R GL+EM KF
Sbjct: 207 AVFDRPYFSVVSVDDVAGVALGGALKNVVAMAVGFADGLEWGGNTKAAIMRRGLLEMQKF 266

Query: 882 VDVFYPGSKLSTFFESCGVA 941
              F+     +   +SCG+A
Sbjct: 267 ATTFFDSDPRTMVEQSCGIA 286


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score =  195 bits (476), Expect = 1e-50
 Identities = 118/262 (45%), Positives = 151/262 (57%), Gaps = 11/262 (4%)
 Frame = +3

Query: 189 VGSGXWGAALAQXVGRNA-ARLSNFXARVTMWVSAAII--EGKQ--LTEXINXTHXNVKY 353
           +GSG WG A+A+  G NA A    F  +V MW+    I  EGK+  LTE  N TH NVKY
Sbjct: 30  IGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFNTTHENVKY 89

Query: 354 LPGHKLPSNXXXXXXXXXXXXXXDLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFD 533
           L G K PSN              D+L++V+PHQFV  IC+ L G +K  A A+S IKG  
Sbjct: 90  LKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAISCIKGVS 149

Query: 534 IAEGGGIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIG-CRDVMLAP-----L 695
           + +   + L S II     + C VL GANIASEVA+EKFCETTIG   +  + P      
Sbjct: 150 VTKDR-VRLFSDIIEENTGMYCGVLSGANIASEVAQEKFCETTIGYLPNSSVNPRYTPKT 208

Query: 696 MRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAVIRLGLMEMI 875
           ++ +    YFR           + GALKNIVAV AG +DGL  GDNTK+AV+R+GL+EM 
Sbjct: 209 IQALFNRPYFRVNIVEDVPGVALGGALKNIVAVAAGIIDGLELGDNTKSAVMRIGLLEMQ 268

Query: 876 KFVDVFYPGSKLSTFFESCGVA 941
           KF  +F+    L+   ESCG+A
Sbjct: 269 KFGRMFFDCKPLTMSEESCGIA 290


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 552 IDLISHIITRCLKIPCAVLMGANIASEVAEEKFCET----TIGCRDVMLAPLMRDII 710
           +D+ + ++T C+  P +VL+    AS +A  K C       IG R   LA  +R  I
Sbjct: 152 LDIAAEVVTACINAPDSVLVDILAASIIAGAKACMREVIGRIGLRSECLASALRRAI 208


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 605 YSTGNF*ASCNNM*YKIDATTFGYIKSLNQ--RQSS---CSWLYFSKQSRADSSD 456
           YS   F   C+N+ +++DA T    KS  +  R SS     ++ F K+ R D +D
Sbjct: 148 YSLDRFIERCSNILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRPDDTD 202


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 450 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 542
           + +R IC T+ G ++ +   + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,713
Number of Sequences: 5004
Number of extensions: 56643
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)