Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_J12.2
(1291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 105 9e-45
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 72 1e-12
05_05_0339 + 24213179-24213821,24214402-24214623,24215035-242152... 38 0.013
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 38 0.017
01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402... 35 0.12
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 32 1.1
02_05_0192 + 26602247-26602617,26602701-26603016 31 2.6
01_01_0896 + 7060431-7061390,7063562-7064191 31 2.6
12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404 29 6.0
12_01_0515 + 4081373-4081622,4081725-4081867,4082061-4082219,408... 29 8.0
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 105 bits (252), Expect(2) = 9e-45
Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Frame = +3
Query: 183 ASVGSGXWGAALAQXVGRNAARLSNFXARVTMWVSAAIIE-GKQLTEXINXTHXNVKYLP 359
A +GSG WG+ ++ + N A+L +F V MWV I+ GK+L+E IN + N KYLP
Sbjct: 11 AVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEILPTGKKLSESINQANENCKYLP 70
Query: 360 GHKLPSNXXXXXXXXXXXXXXDLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIA 539
G KL +N ++L+FV PHQFV IC L+GK++P +SLIKG +IA
Sbjct: 71 GIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVGKLRPGTEGISLIKGMEIA 130
Score = 94.3 bits (224), Expect(2) = 9e-45
Identities = 49/105 (46%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Frame = +3
Query: 630 EVAEEKFCETTIGCR-DVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGF 806
E+A EKF E TIG + D +A + T YF +CG LKN+VA+ AG
Sbjct: 128 EIAVEKFSEATIGYKKDKEVATRWAKLFTTPYFLVSVVEDIEGVELCGTLKNVVAIAAGL 187
Query: 807 VDGLGYGDNTKAAVIRLGLMEMIKFVDVFYPGSKLSTFFESCGVA 941
VDGL G+NTKAA++R+GL EM F + P + +TFFESCGVA
Sbjct: 188 VDGLDMGNNTKAAIMRIGLREMRAFSKLLSPTVRDNTFFESCGVA 232
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 71.7 bits (168), Expect = 1e-12
Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 15/243 (6%)
Frame = +3
Query: 189 VGSGXWGAALAQXVGRNAARLSNFXARVTMWVSAAIIEGKQLTEXINXTHXNVKYLPGHK 368
+G G +G A+A V A L V+M ++ + IN +H N KYL H+
Sbjct: 113 LGGGSFGTAMAAQVAAKKADLE-----VSM-----LLRDDLVCRSINHSHINCKYLRDHR 162
Query: 369 LPSNXXXXXXXXXXXXXXDLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGG 548
LP N D VP QF + + + P +SL KG ++
Sbjct: 163 LPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKLPFISLSKGLEL---N 219
Query: 549 GIDLISHIITRCL---KIPCAVLMGANIASEVAEEK------------FCETTIGCRDVM 683
+ +S II + L + P VL G + A E+ + + +D
Sbjct: 220 TLRTMSQIIPQALGNPRQPFIVLSGPSFAIELMNKLPTGRNLIVIKLYMAAMVVASKDKK 279
Query: 684 LAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAVIRLGL 863
LA ++ ++ + R I GALKN++A+ AG V+G+ G+N AA++ G
Sbjct: 280 LAAAVQQLLASPNLRISTSNDVTGVEIAGALKNVLAIAAGIVEGMHLGNNCMAALVAQGC 339
Query: 864 MEM 872
E+
Sbjct: 340 SEI 342
>05_05_0339 +
24213179-24213821,24214402-24214623,24215035-24215282,
24215385-24215524,24215579-24215753
Length = 475
Score = 38.3 bits (85), Expect = 0.013
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 606 LMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNI 785
L G NIASE+ +++ I D PL + ++ +F + G LKNI
Sbjct: 225 LGGPNIASEIYNKEYANARICGADKWRKPLAK-FLRQPHFIVWDNSDLITHEVMGGLKNI 283
Query: 786 VAVGAGFVDGL-GYGDNTKAAVIRLGLMEMI 875
A+GAG V L +K+ L EMI
Sbjct: 284 YAIGAGMVAALTNESATSKSVYFSLCTSEMI 314
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 37.9 bits (84), Expect = 0.017
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 606 LMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNI 785
L G NIASE+ +++ I D PL + ++ +F + G LKN+
Sbjct: 228 LGGPNIASEIYNKEYANARICGADKWRKPLAK-FLRQPHFIVWDNSDLITHEVMGGLKNV 286
Query: 786 VAVGAGFVDGL-GYGDNTKAAVIRLGLMEMI 875
A+GAG V L +K+ L EMI
Sbjct: 287 YAIGAGMVAALTNESATSKSVYFALCTSEMI 317
>01_07_0128 +
41238510-41239146,41239420-41239461,41240076-41240297,
41240909-41241156,41241296-41241435,41241904-41242027
Length = 470
Score = 35.1 bits (77), Expect = 0.12
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +3
Query: 606 LMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNI 785
L G NIASE+ +++ I + PL + ++ +F + G LKN+
Sbjct: 237 LGGPNIASEIYNKEYANARICGSNKWRKPLAK-FLRQPHFIVWDNSDLVTHEVMGGLKNV 295
Query: 786 VAVGAGFVDGLGYGDNTKAAV 848
A+GAG V L T +V
Sbjct: 296 YAIGAGMVAALTNESATSKSV 316
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 31.9 bits (69), Expect = 1.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 672 DNQWSFRRIFPQQPPMQYWLPL 607
D++W R+F +QPP+++WL +
Sbjct: 93 DSEWVICRVFKKQPPIEHWLEM 114
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 628 RRLLRKNSAKRPLVVGT*CWL--R*CGI-SYRQTTSGSWWWTMRTQSKYVE 771
RRL + R G CW R CG S+R+ +WWW Q ++ E
Sbjct: 46 RRLSAGSGCGRWWSAGDACWRQRRRCGRGSWRRRLLAAWWWRATAQRRFAE 96
>01_01_0896 + 7060431-7061390,7063562-7064191
Length = 529
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 690 EPALRPDNQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 577
+PA R D RR P PP + LPL+ H LG L
Sbjct: 29 KPARRDDGDGGMRRRLPPSPP--WGLPLLGHLHLLGAL 64
>12_01_0572 + 4684050-4684243,4684332-4684426,4684686-4685404
Length = 335
Score = 29.5 bits (63), Expect = 6.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 558 LISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQ 713
++SH I + L PCA + A I E+ + C RDV + M I++
Sbjct: 14 MLSHHIQKDLTKPCAKKVTAVIMDEIGDRNLCALIDESRDVSIKEQMGVILR 65
>12_01_0515 +
4081373-4081622,4081725-4081867,4082061-4082219,
4082339-4082518,4082616-4082845,4082959-4083099,
4083366-4083420
Length = 385
Score = 29.1 bits (62), Expect = 8.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 574 IICDIRSMPPPSAISNPLIKDRAAAVGFIFPSKV 473
++ ++ +PPP + P++ +RA G +FP V
Sbjct: 67 VVALLKPLPPPKTVRYPVLFERAWGFGRLFPCDV 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,568,953
Number of Sequences: 37544
Number of extensions: 418314
Number of successful extensions: 1061
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4015679940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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