Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J12.2
         (1291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...   336   2e-94
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   1.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   1.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   1.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.4  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score =  336 bits (826), Expect = 2e-94
 Identities = 158/251 (62%), Positives = 189/251 (75%)
 Frame = +3

Query: 189 VGSGXWGAALAQXVGRNAARLSNFXARVTMWVSAAIIEGKQLTEXINXTHXNVKYLPGHK 368
           VGSG WG+ +A+ +G NAA  SNF  RVTM+V   II GK+LTE IN TH NVKYLPGHK
Sbjct: 10  VGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIINGKKLTEIINETHENVKYLPGHK 69

Query: 369 LPSNXXXXXXXXXXXXXXDLLIFVVPHQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGG 548
           LP N              D+L FVVPHQF++ ICS L GKIKPTA  LSLIKGFD  +GG
Sbjct: 70  LPPNIIAIPDVVEAAKDADILTFVVPHQFIKRICSALFGKIKPTAIGLSLIKGFDKKQGG 129

Query: 549 GIDLISHIITRCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFR 728
           GI+LISHII++ L IP +VLMGAN+ASEVA E FCETTIGC+D  +AP+++D+++T YF+
Sbjct: 130 GIELISHIISKQLHIPVSVLMGANLASEVANEMFCETTIGCKDKNMAPILKDLMETSYFK 189

Query: 729 XXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTKAAVIRLGLMEMIKFVDVFYPGSK 908
                       CGALKNIVA GAGF+DGLG GDNTKAAV+RLGLME+IKFV++F+PG K
Sbjct: 190 VVVVEDVDSVECCGALKNIVACGAGFIDGLGLGDNTKAAVMRLGLMEIIKFVNIFFPGGK 249

Query: 909 LSTFFESCGVA 941
            +TFFESCGVA
Sbjct: 250 KTTFFESCGVA 260


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 500 SWLYFSKQSRADSSDKLMRHH-KY*KISSFCSFNYXWNSNNIRRQF 366
           S+  + + S+  S D+  R   K  KI S  S NY +N+NN +  +
Sbjct: 288 SYRKYRETSKERSRDRTERERSKERKIISSLSNNYNYNNNNYKYNY 333


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 521 NQRQSSCSWLYFSKQSRADSSDKLMRHH-KY*KISSFCSFNYXWNSNNIRRQF 366
           N  ++   +  + + S+  S D+  R   K  KI S  S NY +N+NN ++ +
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 521 NQRQSSCSWLYFSKQSRADSSDKLMRHH-KY*KISSFCSFNYXWNSNNIRRQF 366
           N  ++   +  + + S+  S D+  R   K  KI S  S NY +N+NN ++ +
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 521 NQRQSSCSWLYFSKQSRADSSDKLMRHH-KY*KISSFCSFNYXWNSNNIRRQF 366
           N  ++   +  + + S+  S D+  R   K  KI S  S NY +N+NN ++ +
Sbjct: 48  NSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 662  HWLSGRNAGSVNAGY 706
            HW SG N G+   GY
Sbjct: 1423 HWKSGHNGGASLTGY 1437


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 662  HWLSGRNAGSVNAGY 706
            HW SG N G+   GY
Sbjct: 1419 HWKSGHNGGASLTGY 1433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,017
Number of Sequences: 438
Number of extensions: 4107
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44303247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)