Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J09.2
         (1379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.066

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect(2) = 0.066
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 805 PPPPPPXXXKKKKKK 761
           PPPPPP   KK+K K
Sbjct: 25  PPPPPPGYVKKRKNK 39



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 847 PFXPXXXXFFXXXNPPPPPPXXXKKKKK 764
           P  P    F     PPPPPP    KK+K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 23.4 bits (48), Expect(2) = 0.066
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 808 NPPPPPP 788
           NPPPPPP
Sbjct: 8   NPPPPPP 14


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,635
Number of Sequences: 5004
Number of extensions: 15298
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 763076352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)