Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J06.2
         (1225 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    55   2e-08
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    31   0.33 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    30   0.75 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    29   0.99 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    29   1.7  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    28   3.0  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   7.0  

>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
 Frame = +3

Query: 561 DRENYSWAQTLMDLDVTVKLPPDIKSSKDLKVAINPGD--IYVCRQNGDVIVKDSLLFKI 734
           +   Y W QT+ D+D+ + +P   + +K L+V ++  D  I +      V++   L  +I
Sbjct: 7   EEAEYEWDQTIADVDIVIHVPKGTR-AKSLQVDMSNHDLKIQINVPERKVLLSGPLEKQI 65

Query: 735 KTSDSFWSLSE-GRLLMHLEKVRE-QWWSKLLIGEEDIDLSKID 860
              +S W++ E  RL++HLEK  + +WWS ++ G   ID+  I+
Sbjct: 66  NLDESTWTVEEQERLVIHLEKSNKMEWWSCVIKGHPSIDIGSIE 109


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = +3

Query: 261 GFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEAS 440
           GF  G  E  +   ++   PK  K       LN +    +  ++     SE+ S D + S
Sbjct: 191 GFSTGTNESEITPNIKVLPPKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNS 250

Query: 441 GEQDVLTSEHQVRKAVSSEPEE 506
            E++  T+E   + A  + PE+
Sbjct: 251 SEENKDTNEPSTKDAEKTVPED 272


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 333 EPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLE-ASGEQDVLTSEHQVRKAVSSEPEEY 509
           EP+K +          VA+E+E   +++T A  E A   +D  +S +   ++  S+ +  
Sbjct: 79  EPNKESGAFGSYKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNYAHHRSADSQTKSA 138

Query: 510 KPPVIP 527
            PP +P
Sbjct: 139 LPPNVP 144


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 635 FYIWWKFYSYIKIHKSLRPRVIFSVRSIVALASLL 531
           F++  K Y ++   K+LR   IFS  + VA+A +L
Sbjct: 171 FFVGCKIYDWVAGSKNLRASTIFSKETTVAIAPML 205


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 877  CKGLEQSIFDKSMSSS-PIKSFDHHCSRTFSRCINNRPSL 761
            C  L++ + DKS+S   P+         T + C+NN PSL
Sbjct: 1535 CWSLKRYVADKSVSGYLPLSKSQEMDMSTVAECLNNHPSL 1574


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 705 IVKDSLLFKIKTSDSFWSLSEGRLLMHLEKVREQWWSKLLIGEEDI 842
           +V+    F+ +T +    L +G LL+ L+++ E WW    +GE+ +
Sbjct: 425 VVRMKYSFEPETENEL-KLKKGDLLLVLKEIDEGWWVGEKLGEDGV 469


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +3

Query: 405 ASEDTSADLEASGEQDVLTSE-----HQVRKAVSSEPEEYKPPVIP 527
           ++    AD+  S  QD++ +E        R++VSS P  + PP +P
Sbjct: 234 SASSKGADVARSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVP 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,172,519
Number of Sequences: 5004
Number of extensions: 86974
Number of successful extensions: 267
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)