Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J06.2
         (1225 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...    64   2e-10
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.      64   2e-10
AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical pr...    29   6.7  
U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical p...    29   6.7  
AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine r...    29   6.7  
Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical pr...    29   8.8  
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 56/258 (21%), Positives = 110/258 (42%), Gaps = 11/258 (4%)
 Frame = +3

Query: 117 NEFSQYDDILSNILVN-EKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELV 293
           +++ ++D +L ++       +   L  +F FL+R+TDFY    G  +         ++  
Sbjct: 2   SQYERFDSVLLSMAQQLSGGVPEMLDVLFEFLSRKTDFYSGA-GVDQARTLLLEKFDKHG 60

Query: 294 IKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIAS---EDTSADLEASGEQDVLTS 464
            K ++  +    ++  +   L          +E E   +   E T  +  A  ++    S
Sbjct: 61  GKAMKEAEEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNS 120

Query: 465 EHQVRKAVSSEPEEYKPPVIPIQK----RSECYNGADRENYSWAQTLMDLDVTVKLPPDI 632
              + K V +E E  K   +  +     +    NGAD   Y W QTL +L+V + +    
Sbjct: 121 VENLEKFVDNEGETSKDAEVEDEDSKLMKPNSGNGADLAKYQWTQTLQELEVKIPIAAGF 180

Query: 633 K-SSKDLKVAINPGDIYVCRQNGDVIVKDSLLFKIKTSDSFWSLSEGR-LLMHLEKVRE- 803
              S+D+ V I    + V  +N   IV   L   IK  +  W +  G+ +++ LEK+ + 
Sbjct: 181 AIKSRDVVVKIEKTSVSVGLKNQAPIVDGKLPHAIKVENCNWVIENGKAIVLTLEKINDM 240

Query: 804 QWWSKLLIGEEDIDLSKI 857
           +WW++ L  +  I+  ++
Sbjct: 241 EWWNRFLDSDPPINTKEV 258


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 56/258 (21%), Positives = 110/258 (42%), Gaps = 11/258 (4%)
 Frame = +3

Query: 117 NEFSQYDDILSNILVN-EKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELV 293
           +++ ++D +L ++       +   L  +F FL+R+TDFY    G  +         ++  
Sbjct: 2   SQYERFDSVLLSMAQQLSGGVPEMLDVLFEFLSRKTDFYSGA-GVDQARTLLLEKFDKHG 60

Query: 294 IKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIAS---EDTSADLEASGEQDVLTS 464
            K ++  +    ++  +   L          +E E   +   E T  +  A  ++    S
Sbjct: 61  GKAMKEAEEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNS 120

Query: 465 EHQVRKAVSSEPEEYKPPVIPIQK----RSECYNGADRENYSWAQTLMDLDVTVKLPPDI 632
              + K V +E E  K   +  +     +    NGAD   Y W QTL +L+V + +    
Sbjct: 121 VENLEKFVDNEGETSKDAEVEDEDSKLMKPNSGNGADLAKYQWTQTLQELEVKIPIAAGF 180

Query: 633 K-SSKDLKVAINPGDIYVCRQNGDVIVKDSLLFKIKTSDSFWSLSEGR-LLMHLEKVRE- 803
              S+D+ V I    + V  +N   IV   L   IK  +  W +  G+ +++ LEK+ + 
Sbjct: 181 AIKSRDVVVKIEKTSVSVGLKNQAPIVDGKLPHAIKVENCNWVIENGKAIVLTLEKINDM 240

Query: 804 QWWSKLLIGEEDIDLSKI 857
           +WW++ L  +  I+  ++
Sbjct: 241 EWWNRFLDSDPPINTKEV 258


>AF003134-2|AAB54141.5|  691|Caenorhabditis elegans Hypothetical
           protein ZC581.3 protein.
          Length = 691

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
 Frame = +3

Query: 219 TDFYYVPDGQY---ENIGFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQ 389
           TD +Y  D +Y   +N   P      +  ++  +    + KE  K ++ N  +  +T  Q
Sbjct: 402 TDHHYDEDHEYHDSDNTTHPTISVVSIETRLSESDSDADSKE--KQSEDNALVEVTTPDQ 459

Query: 390 EVEV----IASEDTSADLEASGEQDVLTSEHQVRKAVSSEPEEYKPPVIPIQKRSECYNG 557
            + +    I + + S DLE SGE+  + +    RK  S +  E  PP       S  Y+ 
Sbjct: 460 LLNLTPPNIVNSNESEDLEESGEEIQIETTTLKRKVFSEDSMENTPP--NFFYSSNRYDS 517

Query: 558 ADRENY 575
             R NY
Sbjct: 518 TTRSNY 523


>Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical
           protein ZK1098.8 protein.
          Length = 910

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 801 EQWWSKLL-IGEEDIDLSKIDCSRP 872
           E+WW+++L I  +D D  K++ SRP
Sbjct: 809 EEWWNRMLHINPDDYDGVKVEMSRP 833


>U23484-14|AAC46763.1|  194|Caenorhabditis elegans Hypothetical
           protein EEED8.3 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 309 TCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASG 443
           TC   N  + H HTDL  + +  T+ +  + IA +D +    A G
Sbjct: 103 TCYKMNGNQLHVHTDLLGKSLIPTIFEFDKPIARDDNAVSTHAEG 147


>AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine
           receptor, class z protein56 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
 Frame = -3

Query: 941 SFSVLVPLKLFYLINVIIWEFM*GP*AVYL**INVFFANQKL*PPLLADFFQMHQQSSLA 762
           SF +L+P+  F ++NV+I  F      +++   N+    +    PL+  F++M + +++ 
Sbjct: 21  SFLMLLPIPCFLIVNVLITPFY-----MFVYKQNIKRDEKMPIFPLMNHFYKMTRTTTVI 75

Query: 761 KTPETITGLNLEQQRVLNNYITVLSTYINISRIYSNF*VL*RFYIWWKFY-----SYIKI 597
                I GL +       N I  L++   +  +  +  +L + Y W  F      + I  
Sbjct: 76  -ILFIILGLFMCFFTQSKNRIFALASLFPVLLLMESLVILTQVYHWLIFLLAAERAIIYF 134

Query: 596 HKSLRPRVIFSVRSIVALASLLYWYHWRLVL 504
             S   RV+  ++SI A    +Y YH  ++L
Sbjct: 135 FPSSEKRVLSILKSIHANIHYIYIYHLLIIL 165


>Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical
           protein B0285.7 protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 859 SIFDKSMSSSPIKSFD-HHCSRTFSRCINNRPSLRLQKLSLV 737
           S+F+ + +     SFD H+   TF+ C+N+ PS+     SL+
Sbjct: 297 SVFEPTSARHVFPSFDLHNQKSTFNLCLNHGPSMSAIANSLI 338


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 810 WSKLLIGEEDIDLSKIDCSRPLHELPDD-HIDKIKELQWNXN 932
           W+K +   E ID+  +D S+    LP D  +DK+  L+ N N
Sbjct: 4   WTKSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKN 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,877,062
Number of Sequences: 27780
Number of extensions: 480857
Number of successful extensions: 1510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3380764392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)