Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J04.2
         (1247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    82   1e-16
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    81   2e-16

>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 43/91 (47%), Positives = 52/91 (57%)
 Frame = +1

Query: 136 HSRLAWVLPSGXSGFGSXXTLXXLRXGXAXLVLIAXNAPPLRXXXXXXXXXXXKPGVHHX 315
           +++LA  + SG    G   TL  LR G A L+LIA N PPLR           K  VHH 
Sbjct: 17  NAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHHY 76

Query: 316 SGXNIELGTACGKXYXVCTLAITXPGXSDII 408
           +G NI+LGTACGK + V  LAIT  G SDI+
Sbjct: 77  AGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 43/91 (47%), Positives = 52/91 (57%)
 Frame = +1

Query: 136 HSRLAWVLPSGXSGFGSXXTLXXLRXGXAXLVLIAXNAPPLRXXXXXXXXXXXKPGVHHX 315
           +S+LA  + SG    G   TL  LR G A L+LIA NAPPLR           +  VHH 
Sbjct: 25  NSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHY 84

Query: 316 SGXNIELGTACGKXYXVCTLAITXPGXSDII 408
           SG NI+LGTACGK + V  LA+   G SDI+
Sbjct: 85  SGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,934
Number of Sequences: 5004
Number of extensions: 31650
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)