Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_J04.2
         (1247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    84   3e-16
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    83   6e-16
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    82   8e-16

>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 83.8 bits (198), Expect = 3e-16
 Identities = 41/95 (43%), Positives = 51/95 (53%)
 Frame = +1

Query: 136 HSRLAWVLPSGXSGFGSXXTLXXLRXGXAXLVLIAXNAPPLRXXXXXXXXXXXKPGVHHX 315
           +++L  V+ SG    G    L  LR     L+++A N PPLR           K  VHH 
Sbjct: 56  NNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIEYYAMLGKVSVHHF 115

Query: 316 SGXNIELGTACGKXYXVCTLAITXPGXSDIITTLP 420
            G N++LGTACGK Y VC L+I  PG SDII T P
Sbjct: 116 HGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 82.6 bits (195), Expect = 6e-16
 Identities = 40/97 (41%), Positives = 53/97 (54%)
 Frame = +1

Query: 136 HSRLAWVLPSGXSGFGSXXTLXXLRXGXAXLVLIAXNAPPLRXXXXXXXXXXXKPGVHHX 315
           +++L  V+ SG    G    L  LR     LV++A N PPLR           K  V+H 
Sbjct: 133 NNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLGKVSVYHF 192

Query: 316 SGXNIELGTACGKXYXVCTLAITXPGXSDIITTLPEA 426
           +G N++LGTACGK Y VC L++  PG SDI   LPE+
Sbjct: 193 NGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229


>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 82.2 bits (194), Expect = 8e-16
 Identities = 44/107 (41%), Positives = 56/107 (52%)
 Frame = +1

Query: 94  LVAAXPXXXPLASXHSRLAWVLPSGXSGFGSXXTLXXLRXGXAXLVLIAXNAPPLRXXXX 273
           +VAA        + +++L  V+ SG    G    L  LR   A LV+I+ N PPLR    
Sbjct: 1   MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60

Query: 274 XXXXXXXKPGVHHXSGXNIELGTACGKXYXVCTLAITXPGXSDIITT 414
                  K  VHH  G N++LGTACGK + VC L+I  PG SDII T
Sbjct: 61  EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,801,964
Number of Sequences: 37544
Number of extensions: 247038
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3852724812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)