Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_J02.2
(1313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.003
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.005
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.012
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.20
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.62
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 5.7
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 7.6
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 7.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/79 (27%), Positives = 26/79 (32%)
Frame = +1
Query: 244 PPPXXARXXPXAPPPXPAAXRXXLAARPPPAXXXXPXAPPXXRSPPXXPXPXXSAXPXXA 423
PPP + PP P A A PP + P +PP P + P A
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435
Query: 424 XPXXXXPAPXXPXXXPXXP 480
P AP P P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAP 454
Score = 36.3 bits (80), Expect = 0.009
Identities = 28/101 (27%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Frame = +1
Query: 181 PTASPXCAXXGXSP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPPAXXXXPXAP 360
P A P +P LPP P P P+A + PP P AP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 361 PXXRSPPXXPXPXXSAXPXXAXPXXXXPA-PXXPXXXPXXP 480
P S P P P + P PA P P P P
Sbjct: 448 PLPPSAPIAP-PLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 28.7 bits (61), Expect = 1.9
Identities = 29/113 (25%), Positives = 35/113 (30%), Gaps = 14/113 (12%)
Frame = +1
Query: 163 APLRCXPTASPXCAXXGXSP*LP--PXXVPPPXXARXXPXAPPPXPAAXRXXLAAR---- 324
AP P ++ + SP P P + P + P PPP LAA
Sbjct: 252 APPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRP 311
Query: 325 --PPPAXXXXPXAPPXXRS------PPXXPXPXXSAXPXXAXPXXXXPAPXXP 459
PPP PP PP P P +A P AP P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = +1
Query: 181 PTASPXCAXXGXSP*LP---PXXVPPPXXARXXPXAPPPXPAAXRXXLAARP 327
P A P +P LP P P P A P AP P PAA +A P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 27.5 bits (58), Expect = 4.3
Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Frame = +1
Query: 241 VPPPXXARXXPXAPPPXPAAXRXXLAARPPP-----AXXXXPXAPP--XXRSPPXXPXPX 399
+P P R P PPP A +PPP A P PP RS P P P
Sbjct: 351 IPLPPQGRSAPPPPPPRSAPST---GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP-PL 406
Query: 400 XSAXPXXAXPXXXXPA--PXXPXXXP 471
+A P P+ P P P
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAPPSLP 432
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 0.005
Identities = 29/105 (27%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
Frame = +1
Query: 154 PXRAPLRCXPTASPXCAXXGXSP*LPPXXVPP-PXXARXXPXAPPPX--PAAXRXXLAAR 324
P AP P P A P +PP P A P PPP P + +
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPA--PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
Query: 325 PPPAXXXXPXAPPXXRSPPXXPXPXXSAXPXXAXPXXXXPAPXXP 459
P P P P P P P A P A P P+ P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA-PSSEAPSVSTP 1252
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/106 (25%), Positives = 32/106 (30%)
Frame = +1
Query: 163 APLRCXPTASPXCAXXGXSP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPPAXX 342
AP P +P P + VP P A AP P + +AA P P
Sbjct: 1078 APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPS 1137
Query: 343 XXPXAPPXXRSPPXXPXPXXSAXPXXAXPXXXXPAPXXPXXXPXXP 480
P P + P P P A P P P P P
Sbjct: 1138 GAPPVPKPSVAAPPVPAP-SGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
Score = 36.7 bits (81), Expect = 0.007
Identities = 25/84 (29%), Positives = 28/84 (33%)
Frame = +1
Query: 229 PPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPPAXXXXPXAPPXXRSPPXXPXPXXSA 408
PP VP P A P P + +AA P PA P P + P P P S
Sbjct: 1121 PP--VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP-SSG 1177
Query: 409 XPXXAXPXXXXPAPXXPXXXPXXP 480
P P P P P P
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 36.3 bits (80), Expect = 0.009
Identities = 36/124 (29%), Positives = 44/124 (35%), Gaps = 17/124 (13%)
Frame = +1
Query: 160 RAPLRCXPTA-SPXCAXXGXSP*LP-PXXVPP-PXXARXXPXAPPPXPA------AXRXX 312
+AP P+A +P +P +P P PP P + P APPP PA +
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Query: 313 LAARPPPAXXXXPXAP-PXXRSPPXX-------PXPXXSAXPXXAXPXXXXPAPXXPXXX 468
A P PA P P P +PP P P S P P P P
Sbjct: 1080 SGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139
Query: 469 PXXP 480
P P
Sbjct: 1140 PPVP 1143
Score = 35.5 bits (78), Expect = 0.016
Identities = 29/110 (26%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Frame = +1
Query: 154 PXRAPLRCXPTASPXCAXXGXSP*LPPXXVPP-PXXARXXPXAPPPXPAAXRXXLAARPP 330
P P + P ++P SP P VPP P + P P P A + + P
Sbjct: 982 PTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 331 PAXXXXPXAPPXXRSPPXXPXPXXSAXPXXAXPXXXXPAPXXPXXXPXXP 480
P PP +S P SA P P P+ P P P
Sbjct: 1042 PV-PIPTSTPPVPKSSSGAP----SAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Score = 35.5 bits (78), Expect = 0.016
Identities = 31/121 (25%), Positives = 34/121 (28%), Gaps = 1/121 (0%)
Frame = +1
Query: 154 PXRAPLRCXPTASPXCAXXGXSP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPP 333
P AP P P A VP P A AP P + +AA P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Query: 334 A-XXXXPXAPPXXRSPPXXPXPXXSAXPXXAXPXXXXPAPXXPXXXPXXPXXXXXXXPXK 510
A P P P P P S P P P P P P P
Sbjct: 1173 APSSGIPPVPKPAAGVP--PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Query: 511 I 513
+
Sbjct: 1231 V 1231
Score = 32.3 bits (70), Expect = 0.15
Identities = 30/110 (27%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Frame = +1
Query: 154 PXRAPLRCXPTASPXC-AXXGXSP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPP 330
P AP PT++P +P PP P P + P P P A P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPP---PVPAPSSEIPSIPAPS--------GAPPV 1085
Query: 331 PAXXXXPXAPPXXRSPPXXPXPXXSAXPXXAXPXXXXPAPXXPXXXPXXP 480
PA P P + P P P + P A P P P P P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA-PSGAPPVPKPSVAAPPVP 1134
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.9 bits (79), Expect = 0.012
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 217 SP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPPAXXXXPXAPP--XXRSPPXXP 390
+P P + PP A P PPP PA+ + PP P A P +SPP P
Sbjct: 129 APPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188
Query: 391 XPXXSAXP 414
+ P
Sbjct: 189 SLPSAVPP 196
Score = 31.5 bits (68), Expect = 0.27
Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Frame = +1
Query: 154 PXRAPLRCXPTASPXCAXXGXSP*LPPXXVPPPXXARXXPXAPPPXPAA----XRXXLAA 321
P AP PT +P P P P A P PP P++ +
Sbjct: 124 PPSAP--APPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
Query: 322 RPPPAXXXXPXAPPXXRSPPXXPXPXXSAXP 414
+ PP+ P A P PP P P S P
Sbjct: 182 KSPPSAPSLPSAVPP--MPPKVPPPPLSQAP 210
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = +1
Query: 277 APPPXPAAXRXXLAARPP----PAXXXXPXAPPXXRSPPXXPXPXXSAXPXXAXPXXXXP 444
APP PA RPP P P +P P P S+ P A P
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 445 APXXPXXXP 471
+P P
Sbjct: 183 SPPSAPSLP 191
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.20
Identities = 22/77 (28%), Positives = 25/77 (32%)
Frame = +1
Query: 217 SP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPPAXXXXPXAPPXXRSPPXXPXP 396
SP LP + +PPP P A + P PA P P PP P P
Sbjct: 711 SPLLPDVSDTVEEQQKLLLKSPPPPPPAV---IVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Query: 397 XXSAXPXXAXPXXXXPA 447
A P PA
Sbjct: 768 PGVAGAGPPPPPPPPPA 784
Score = 30.7 bits (66), Expect = 0.47
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 193 PXCAXXGXSP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPP 333
P A +P P VPPP P PPP P PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 2.5
Identities = 22/64 (34%), Positives = 22/64 (34%)
Frame = +1
Query: 217 SP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPPAXXXXPXAPPXXRSPPXXPXP 396
SP PP V P A PPP P PPP PP PP P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGG---PPPPPPPPGVAGAGPP----PPPPPPP 783
Query: 397 XXSA 408
SA
Sbjct: 784 AVSA 787
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.62
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 166 PLRCXPTASPXCAXXGXSP*LPPXXVPPPXXARXXPXAPPPXP 294
P+R A P + P PP VPPP A P PP P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPP--PPMSVPPPPSAPPMPAGPPSAP 1731
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Frame = +1
Query: 280 PP--PXPAAXRXXLAARPPP---AXXXXPXAPPXXRSPPXXPXPXXSAXPXXAXP 429
PP P AA A PPP + P APP PP P P A + P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +1
Query: 217 SP*LPPXXVPPPXXARXXPXAPPPXPAAXRXXLAARPPPAXXXXPXAPPXXRSPPXXPXP 396
+P + P PP + PPP P ++ PPP+ P PP S P P P
Sbjct: 1689 TPPVRPQSAAPPQMSAP---TPPPPP------MSVPPPPSAPPMPAGPP---SAPPPPLP 1736
Query: 397 XXSA 408
SA
Sbjct: 1737 ASSA 1740
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = +1
Query: 232 PXXVPPPXXARXXPXAPPPX--PAAXRXXLAARPPPAXXXXPXAPPXXRSPP 381
P PP R APP P ++ PPP+ P PP PP
Sbjct: 1686 PVSTPP---VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = +1
Query: 283 PPXPAAXRXXLAARPPPAXXXXPXAPPXXRSPPXXPXPXXSAXPXXAXPXXXXPAPXXPX 462
P P + P P PP PP P SA P A P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPP----PPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Query: 463 XXPXXP 480
P P
Sbjct: 1739 SAPSVP 1744
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = -1
Query: 389 GXXGGERXXGGAXGXXXXAGGGRAASXXRXAAGXGGGAXG 270
G G GG G GG R G GGG+ G
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRG 168
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 5.7
Identities = 23/98 (23%), Positives = 27/98 (27%), Gaps = 1/98 (1%)
Frame = +1
Query: 139 PRRXXPXRAPLRCXPTASPXCAXXGXSP*LPPXXVPPPXXARXXPXAP-PPXPAAXRXXL 315
P P + P + +P +P P P P P PP P A
Sbjct: 457 PSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAP---- 512
Query: 316 AARPPPAXXXXPXAPPXXRSPPXXPXPXXSAXPXXAXP 429
P P PP PP P P A P
Sbjct: 513 -GMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMP 549
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +1
Query: 139 PRRXXPXRAPLRCXPTASPXCAXXGXSP*LPPXXVPPPXXARXXPXAPPP 288
PRR P R P S A LPP + PP APPP
Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAA-----LPPRTMAPPPAPSRVQQAPPP 46
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/56 (30%), Positives = 19/56 (33%)
Frame = -1
Query: 479 GXXGXXXGXXGAGXXXXGXAXXGXAEXXGXGXXGGERXXGGAXGXXXXAGGGRAAS 312
G G G G G G G G GG GGA G + GGR +
Sbjct: 13 GSRGGRGGFNG-GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,962
Number of Sequences: 5004
Number of extensions: 16102
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 719358436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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