Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I24.2
         (1202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0053 - 19276891-19277079,19277947-19278073,19278320-192784...    30   4.2  
06_01_0182 + 1413551-1413794,1413883-1414139,1414241-1414387,141...    29   9.6  
01_01_0246 + 2020415-2021167                                           29   9.6  

>02_04_0053 -
           19276891-19277079,19277947-19278073,19278320-19278435,
           19279089-19279382
          Length = 241

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 576 NRVRSLFYRQYYRYYEEKTSKHVVLT**RLPFCSNRIVFKLVCNQH 713
           +R RS+  +     YE K  K  +LT   LP  ++R V   VCNQH
Sbjct: 195 SRARSMLQKLGLEKYE-KNFKKGLLTDQTLPLLTDRQVIVFVCNQH 239


>06_01_0182 +
           1413551-1413794,1413883-1414139,1414241-1414387,
           1414487-1414804
          Length = 321

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 813 LRVTTLLQISAIYTFIKKKHQPKLRLK-IHKYTFNVDYKLT*TLFGLNKTGGVITSKQH 640
           L +  LL++ A+      K Q +L++K + KY   +D  +      + K+G  +TSKQH
Sbjct: 192 LLMNELLKLDAVVADGDVKAQRRLQVKRVQKYVETLDAVMAKNAAIVRKSGEKLTSKQH 250


>01_01_0246 + 2020415-2021167
          Length = 250

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -3

Query: 675 NKTGGVITSKQHVWTFFLHNNDSIGDRIRTVRDSYQCMSLRYKTLIKIVVFNAF 514
           N + GV T +    T F   N S GDR   V D ++   L   T   I VFN F
Sbjct: 67  NYSTGVATLRSSTDTGFDIINISYGDRTMLVFDVHKLARLNSSTGCSIPVFNTF 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,996,762
Number of Sequences: 37544
Number of extensions: 327688
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3678130032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)