Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I20.2
         (1265 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903     31   1.5  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    30   3.4  

>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
          Length = 405

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 916 RKPHASRREKGGQVSGXRQGRNRRAHEGASRGK 818
           R+PH SRRE+ G  S  + G ++ A+   S+ K
Sbjct: 128 RQPHRSRRERDGNGSDGKSGSSQAANRNVSKDK 160


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 714 CWRFSIGSAPLTSITKIDAQVXGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 872
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,700,509
Number of Sequences: 37544
Number of extensions: 485716
Number of successful extensions: 1330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3922562724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)