Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_I18.2
         (1302 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.36 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   7.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.36
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 326  YNTVSNV-WRQLKAPGAPPPRSAHQA 400
            Y+T+    WRQ + P  PPP S+ QA
Sbjct: 1342 YSTLERTAWRQQQPPPPPPPPSSGQA 1367


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 922 QHPRLRPGAAGSADGHGAPR*G-SPLL 845
           Q  RLR    GS  G+G PR G  PLL
Sbjct: 135 QKYRLRHKGDGSPGGNGGPRNGLLPLL 161


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 365 PGAPPPRSAHQAVSTPAN 418
           PGAPP ++  Q + +PA+
Sbjct: 52  PGAPPSQNPSQMMISPAS 69


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 922 QHPRLRPGAAGSADGHGAPR*G-SPLL 845
           Q  RLR    GS  G+G PR G  PLL
Sbjct: 135 QKYRLRHKGDGSPGGNGGPRNGLLPLL 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,550
Number of Sequences: 438
Number of extensions: 6785
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44783499
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)