Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_I17.2
(1293 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 93 8e-20
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 52 1e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 50 5e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 5e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 47 7e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 3e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 6e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 1e-04
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 42 1e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 2e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 4e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 40 6e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 0.001
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 0.002
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 39 0.002
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 38 0.002
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.003
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.004
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.005
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.009
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.012
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 36 0.016
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 35 0.028
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.037
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.037
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.049
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.065
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.086
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.15
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 32 0.15
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.35
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.35
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.60
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.80
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.80
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 3.2
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 3.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 3.2
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 3.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 9.8
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 9.8
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 93.1 bits (221), Expect = 8e-20
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Frame = +1
Query: 382 GLPSLCLRPQXSIXKVMAAGEHTINNKKVDPKKAKARH-----GKIFVGGLSSEISDDEI 546
G L + + +VM+ EH ++ K +DPK+A R K+FVGG+ + +++E
Sbjct: 205 GFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEF 263
Query: 547 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRAT 726
RNFF++FG +L+ + DK + +GF F+T+E+E V + P TI GK V+VKRAT
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRAT 323
Query: 727 PK 732
PK
Sbjct: 324 PK 325
Score = 71.7 bits (168), Expect = 2e-13
Identities = 30/81 (37%), Positives = 56/81 (69%)
Frame = +1
Query: 496 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 675
GK+F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 676 TPKRTIGGKEVDVKRATPKPD 738
+ + + GK +D KRA P+ +
Sbjct: 222 SKEHHLDGKIIDPKRAIPREE 242
Score = 57.2 bits (132), Expect = 5e-09
Identities = 24/51 (47%), Positives = 31/51 (60%)
Frame = +3
Query: 258 KLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFKAP 410
K+F+GGL+W T LR +F +GE+ V TGRSRGF F+ FK P
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 255 SKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
+K+FVGG+ T + R F +G + + +TGR RGF F+ ++
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 52.4 bits (120), Expect = 1e-07
Identities = 28/102 (27%), Positives = 48/102 (47%)
Frame = +1
Query: 373 DHXGLPSLCLRPQXSIXKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRN 552
D P+ + I + E TI K + K + + G ++VG L + ++R
Sbjct: 64 DEEDSPNALVNTSRQIMDLGEDAEKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRM 123
Query: 553 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 678
+FS+FG +L + M ++ K + FI FES V N + +T
Sbjct: 124 YFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 50.4 bits (115), Expect = 5e-07
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Frame = +1
Query: 499 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK----GFCFITFESEQVVND 666
++FVG LS+ EIR+ F GT+ +V +PF + + + G F+TF +++ V+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 667 LLKTPK-RTIGGKEVDVKRATP 729
++T +T+ +E+ V++A P
Sbjct: 105 AIETLNGKTLDDREIVVQKARP 126
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.2 bits (107), Expect = 5e-06
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 499 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 675
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 676 TPKRTIGGKEVDV 714
+ G+ + V
Sbjct: 384 LDAKPFQGRLLHV 396
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.8 bits (106), Expect = 7e-06
Identities = 22/79 (27%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 493 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 669
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 670 LKTPKRTIGGKEVDVKRAT 726
+ + IG + V + RAT
Sbjct: 88 REKNGKYIGSRPVKLSRAT 106
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 258 KLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
+LFVG L + L F Y + V G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKV-VRDREGKTRGFGFVSFK 78
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/85 (24%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 472 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES- 648
P+ ++ +FV G++S + +DE++ FS+FGT+ V + + +GF F++F +
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 649 EQVVNDLLKTPKRTIGGKEVDVKRA 723
E+ + + + G+ ++V++A
Sbjct: 153 EEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 30.7 bits (66), Expect = 0.46
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
LFV G++ L+ F +G + + P T SRGF F+ F
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 3e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 654
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
+++G L + + F +GE N+ TG+S+GFAF+ ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 43.6 bits (98), Expect = 6e-05
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +1
Query: 406 PQXSIXKVMAAGEHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSE 564
P+ + + +H+++N K+K + GK +FVG L + S + ++ F
Sbjct: 55 PEKQLAQSNDKDKHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKR 114
Query: 565 FGTILEVEMPFDKTKNQRKGFCFITF 642
G + V +P DKT ++KG+ F+ F
Sbjct: 115 AGQVPSVRIPTDKTSGRQKGYAFVEF 140
Score = 36.3 bits (80), Expect = 0.009
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFKAP 410
LFVG L + + L+ HF G++ + +GR +G+AF+ F P
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKT 678
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 679 PKRTIGGKEVDVKRATPKP 735
+ I G+ V++ + P+P
Sbjct: 325 GTKEIDGRMVNLDLSNPRP 343
Score = 42.3 bits (95), Expect = 1e-04
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 681
+FVG LS ++D++ F G I + +P D + KGF ++TF ++
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 682 KRTIGGKEVDVKRATPK 732
I G+ + +TP+
Sbjct: 428 GHFIAGRPCRLDFSTPR 444
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFKAP 410
+FVG LSW + L F YG I V +GRS+G+ ++ F+ P
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
+FVG LS+ T L FG G+I + P +GR +GF ++ F
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 42.3 bits (95), Expect = 1e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 252 ASKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
+S LFVG L + T L+ HFG G+I + +TG+ +GF F+ F
Sbjct: 227 SSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 33.1 bits (72), Expect = 0.086
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 642
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 2e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 415 SIXKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 588
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 589 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 690
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 4e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +1
Query: 469 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 648
DP K G +F+ L I + + + FS FG IL ++ D+ N KG+ F+ F+S
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDS 217
Query: 649 EQVVN 663
+ N
Sbjct: 218 VESAN 222
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFKAP 410
LF+ L + L+ F A+G I + G+S+GF F+ + P
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTP 414
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 40.3 bits (90), Expect = 6e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 678
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 679 PKRTIGGKEVDVKRA-TPKP 735
K+ G+ + + RA + KP
Sbjct: 332 EKKMPEGRTLRIMRAKSTKP 351
Score = 35.9 bits (79), Expect = 0.012
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
+FVG L++ + L +FG G I + P T +GFA+I FK
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 472 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 594
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 249 AASKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTG 371
A S +FVGGLS + + L+ F +GEI VK P G
Sbjct: 301 ANSTVFVGGLSKFVSEEELKYLFQNFGEIVY--VKIPPGKG 339
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 603
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 38.7 bits (86), Expect = 0.002
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Frame = +1
Query: 451 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-------------LEVE 588
+NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 589 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 735
PF KN + + F+ F + + + ++LK K T+G +++ +K P
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 28.3 bits (60), Expect = 2.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 315 FGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
F +G I + PN+G S+G+ F+ F+
Sbjct: 404 FSPFGSILSSMLACYPNSGISKGYGFVAFR 433
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 240 GRAAASKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
G +++FV +S T + LR HF ++GE+ ++K P TG S G I F
Sbjct: 89 GPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISF 142
Score = 34.3 bits (75), Expect = 0.037
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +1
Query: 499 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 663
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 252 ASKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFKAP 410
A ++VG + + T + L+ HF + G + + TG +GFA+I F P
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 672
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 475 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 642
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 243 RAAASKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
R ++ L V LS + LR F +G I + TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 678
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 679 PKRTIGGKE--VDVKR 720
+ G+E V +KR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 681
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 682 K-RTIGGKEVDVKRATPK 732
K + + G+ + + ATP+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 255 SKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
S LFV L++ L F G I V P TG +RG+ F+ F
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 30.7 bits (66), Expect = 0.46
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 675
+FV L E ++ E+ N F +FG + ++ D ++ G FI F E+ + L+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.009
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +1
Query: 508 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 687
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 688 TIGGKEVDVKRATPK 732
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 267 VGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
VG LS+ T L FG + + P T RSRGF ++ F+
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFE 141
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.9 bits (79), Expect = 0.012
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 499 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 675
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++ K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 676 T--PKRTIGGKEVDVKRATP 729
+ T G ++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 35.5 bits (78), Expect = 0.016
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 678
+FV L++ ++ E+ +FF + G + + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 679 PKRTIG 696
KR +G
Sbjct: 302 GKRLLG 307
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 34.7 bits (76), Expect = 0.028
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 678
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 679 PKRTIGGKEVDVKRATPKP 735
+G +++ V+ + P
Sbjct: 69 NNSELGPRKIRVEFPSNDP 87
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +3
Query: 249 AASKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
A + +FVG + + + + + F G + + P TG +G+ F F
Sbjct: 5 AGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.037
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 499 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 648
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.037
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 454 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 633
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 634 ITFESEQ 654
FE E+
Sbjct: 342 ACFEEEK 348
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.049
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
+F+ LS+ + F YG I V TG+S G+AF+VF+
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.5 bits (73), Expect = 0.065
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 508 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 687
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 688 T-IGGKEVDVKRATP 729
T + G E+ + + +P
Sbjct: 147 TNLKGSEIQISKKSP 161
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 33.1 bits (72), Expect = 0.086
Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 475 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 651
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I + +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATL 61
Query: 652 QVVNDLLKTPKRTIGGKEVDVKRATPKP 735
+ + ++ ++++V A +P
Sbjct: 62 EQAQKAVDEKNLSLLDEKLEVDFAFLEP 89
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 660
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 261 LFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
++VG L W + + L F G + + P TGRS+GF + F+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFE 328
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 258 KLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
+++VG LS+ L+ G G + + PN G S+G A I +
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPN-GLSKGCAIIEY 113
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 532 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 711
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 712 V 714
+
Sbjct: 309 I 309
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.1 bits (67), Expect = 0.35
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 642
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.60
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 520 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 648
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 29.9 bits (64), Expect = 0.80
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +3
Query: 255 SKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVFK 404
S LF+ LS+ T + + FG YG + + NT ++RG AF+V++
Sbjct: 12 SILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.80
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 376 HXGLPSLCLRPQXSIXKVMAAG--EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIR 549
H +PS L P + K G + + P K +F+GG++ + + +R
Sbjct: 365 HLSIPST-LPPADGVPKPTPDGFPRRFERDPTIPPDSIKVYSRTLFLGGITRSVREPVLR 423
Query: 550 NFFSEFGTILEVEMPFDKTKNQRKGF 627
+ F FG++ + + N R GF
Sbjct: 424 SMFERFGSVQSLIL----NHNYRHGF 445
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 591
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 3.2
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +1
Query: 430 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 609
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 610 NQRKG------FCFITFESE 651
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 472 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 612
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 255 SKLFVGGLSWXPTXKXLRXHFGAYGEIXXXNVKXXPNTGRSRGFAFIVF 401
+ LFVG L + L F A G++ GRS+G+ F+ +
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 648
+FVG L + + + + FS G +++ + KG+ F++++S
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 681
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 502 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 591
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,785
Number of Sequences: 5004
Number of extensions: 45167
Number of successful extensions: 189
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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